BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2867.p (373 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 117 1e-27 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 111 7e-26 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 107 1e-24 gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Ma... 89 5e-19 gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Ma... 87 1e-18 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 118/394 (29%), Positives = 173/394 (43%), Gaps = 51/394 (12%) Query: 1 MKKLAFTLTALGLTQLTGLAYAQSSSVTVYGVIDMSLVYTNKVGPNNSSRMSLDSGDAMA 60 MKK L LG G A AQSS VTVYG++D+ + + P S+ +DSG A Sbjct: 1 MKKSLLALAVLG--AFAGAASAQSS-VTVYGIVDLGFAHVDDGNPA-GSKNGIDSGGQSA 56 Query: 61 SRIGVRGKEELGGGLAAVFQLE----------------NGFAADDGAMSTPGTLFDRKSV 104 SRIG +G E+LG GL A+FQLE + G + G F+R + Sbjct: 57 SRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGG-FNRFAT 115 Query: 105 VGL-SGRYGTLTLGRQTDYLEEIGLQYSSFQIFGGGG----VRAGHFNSLDRLTGARTSN 159 VGL S +GT+ LGRQT +++ Y FG GG + FN + R SN Sbjct: 116 VGLQSAAFGTVLLGRQTSVIKD---AYDQIDPFGDGGTVGAISTVFFNGVLAGDYGRISN 172 Query: 160 SLRFDTAEVNGFMGSLFYGFGEVAGQTSAGQAFGVGANYRNGNAGIGAAYYQSKLAADAL 219 S ++ + GF YGFGE G T A +G+G Y NG + AY+ + A Sbjct: 173 SAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHNQDRSTVAN 232 Query: 220 PAHAGDSDLKTFTLGASYQAGPAKLFAAWSQVRRPTQQPLAATGLVAITSATRANVFDVG 279 P+ ++ K LGA+Y G KL A+ + VA T N + +G Sbjct: 233 PS-VQQAEGKLMLLGATYDFGVVKLHGAYGDTKLENS--------VANTEVKYRN-YMLG 282 Query: 280 VDYALDAKLHLLASVIHDRADLARSGSGATRGHTTQFNLGVDYFLSKRTDVYAMASRQAA 339 V + + +D + + +F + Y LSKRT++Y S+ + Sbjct: 283 VSAPVGPGTIFASYTANDNRSVDNA-------DAKKFAISYSYDLSKRTNLYTGYSKTSN 335 Query: 340 SAVINPGVISAAYSSAPADDSSQNVLRIGVRHKF 373 + G + AP +S+ + +G+RHKF Sbjct: 336 ----DDGSRIGLNAGAPVGESAS-IFNVGIRHKF 364 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 111 bits (277), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 116/379 (30%), Positives = 166/379 (43%), Gaps = 58/379 (15%) Query: 1 MKKLAFTLTALGLTQLTGLAYAQSSSVTVYGVIDMSLVYTNKVGPNNSSRMSLDSGDAMA 60 MKK F + L + G Y QSS VTVYGV+D+ L N N + +DSG+ Sbjct: 1 MKKTLFAFSMLA--SMAGATYGQSS-VTVYGVVDLGLKIEN---AGNGTVTGIDSGNQSV 54 Query: 61 SRIGVRGKEELGGGLAAVFQLENGFAADDGAMSTPGTLFDRKSVVGLSGRYGTLTLGRQT 120 SR+G +G E+LG GL A F LE GF AD G+ S F+R+S V L+G +G + LGR Sbjct: 55 SRVGFKGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSLAGGFGEVKLGRVQ 114 Query: 121 DYLEEIGLQYSSF-QIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEVNGFMGSLFYGF 179 + + F G VR ++ G R N++ + A NG G Y F Sbjct: 115 TMVFTNSAVFDPFADTLAGDSVRIFNYG------GNRIDNTVNYSFAAKNGINGQAAYSF 168 Query: 180 GEVAGQTSAGQAFGVGANYRNGNAGIGAAYYQSKLAADALPAHAGDSDLKTFTLGASYQA 239 GEVAG TSA + Y +G Y +K G+ KT +G +Y Sbjct: 169 GEVAGNTSASRTVAGAIGYASGPLATVLTYQDTKDV-------TGNDSAKTTLIGGNYNF 221 Query: 240 GPAKLFAAWSQVR----RPTQQPLAATGL-VAITSATRANVFDVGVDYALDAKLHLLASV 294 G + F A++ + T+ L GL + +TSA D + + + V Sbjct: 222 GLLQPFIAYAVNKGFGTLDTRDAL--LGLKINLTSA----------DTIMTSYMQKRDKV 269 Query: 295 IHDRADLARSGSGATRGHTTQFNLGVDYFLSKRTDVYAMASRQAASAVINPGVISAAYSS 354 I D AD Q +G + LS RT++Y +R + +AAY Sbjct: 270 I-DNAD------------AKQIAIGYTHNLSVRTNLYTSWARLSNDD-------NAAYRV 309 Query: 355 APADDSSQNVLRIGVRHKF 373 A + + + IG+RHKF Sbjct: 310 TSAGKTDK-LFNIGIRHKF 327 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/376 (29%), Positives = 165/376 (43%), Gaps = 53/376 (14%) Query: 1 MKKLAFTLTALGLTQLTGLAYAQSSSVTVYGVIDMSLVYTNKVGPNNSSRMSLDSGDAMA 60 MK A AL G A SSV VYG+ID++L Y + P + +++G Sbjct: 1 MKAFAMQGLALAAMLACGTASQAQSSVQVYGLIDVALAYDKQ--PGKAGVTGVENGKMTT 58 Query: 61 SRIGVRGKEELGGGLAAVFQLENGFAADDGAMS--TPGTLFDRKSVVGLSGRYGTLTLGR 118 S +G++G E+LGGGL+ +F LE+ F AD G+ + R S VGL GR+G++ LGR Sbjct: 59 SYLGLKGSEDLGGGLSTIFALESYFRADTGSNGRFDGDGFWTRSSYVGLQGRFGSVRLGR 118 Query: 119 QTDYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTG-ARTSNSLRFDTAEVNGFMGSLFY 177 + L L ++ F G H+ + +TG + S+S+ + + +G +L Sbjct: 119 NSVPLFISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGWSDSIAYVSPNFSGLTVNLI- 177 Query: 178 GFGEVAGQTSAGQAFGVGANYRNGNAGIGAAYYQSKLAADALPAHAGDSDLKTFTLGASY 237 AG+ + G G Y G G+ A Y + + A +D T+ LG+SY Sbjct: 178 ---AAAGEGNGGPNVGGSVLYTKGPLGLTAVYQRVRKGAAI-------ADTTTWQLGSSY 227 Query: 238 QAGPAKLFAAWSQVRRPTQQPLAATGLVAITSATRANVFDVGVDYALDAKLHLLASVIHD 297 K+FA + QV+ + QP + D+GV L L A + D Sbjct: 228 DFDVVKVFAQYGQVKNVSAQP-----------DIEYKLTDLGVAIPLGGGKVLAAYGLLD 276 Query: 298 RADLARSGSGATRGHTTQFNLGVDYFLSKRTDVYAMASRQAASAVINPGVISAAYSSAPA 357 GA R +LG DY LSKRTDVY + R A+ Sbjct: 277 PV------VGAKR---ETLSLGYDYNLSKRTDVYLVLMRDELDAL--------------- 312 Query: 358 DDSSQNVLRIGVRHKF 373 S+ L +G+RH+F Sbjct: 313 --SAGKSLAVGIRHRF 326 >gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Marseille] Length = 413 Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 120/432 (27%), Positives = 179/432 (41%), Gaps = 96/432 (22%) Query: 10 ALGLTQLTGLAYA--QSSSVTVYG-----VIDMSLV--------YTNKVGPNNSSRMSLD 54 AL ++ GL ++ SVTVYG + + SL + V P ++ SL Sbjct: 10 ALAISAACGLPFSVQAEPSVTVYGKLYPQITNYSLSRGTAAGTSVSTLVSPVTATPQSLS 69 Query: 55 SG--DAMASRIGVRGKEELGGGLAAVFQLENGFAADDGAMSTPGTLFDRKSVVGLSGRYG 112 ++ S IG RG E++G GL A+FQLE D GA S+P F R++ VGL G G Sbjct: 70 GTVVESSNSYIGFRGSEKIGDGLTAMFQLEASIGIDTGAQSSPDIFFSRETFVGLEGGLG 129 Query: 113 TLTLGRQTDYLEEIGLQYSSFQIFGGGGVRAGHF--------------NSLDRLTGARTS 158 + +G+ + +G S GGV +G+F NS R R + Sbjct: 130 EIKMGKLDTVYKSLGDTLSF------GGVSSGNFVSGSNIMSKNGFGTNSAHRFH-ERPA 182 Query: 159 NSLRFDTAEVNGFMGSLFYGFGEVAGQTSAGQAFGVGANYRNGNAGIGAAYYQSKL---A 215 N++ + T EV+GF G L Y FGE+ S G G Y+ G + A Q + A Sbjct: 183 NTVMYTTPEVSGFQGLLGYSFGEIPDDRSRGNIISAGITYKAGPWYVALANEQHENFYGA 242 Query: 216 ADALPAHAGDSDLKTFTLGASYQAGPAKLFAAWSQVRRPTQQPLA--ATGLVAITSATRA 273 + LPA L+ T G A + +V + + A AT TS TRA Sbjct: 243 SRNLPA-----ALRNITGGTG---------AGFIRVPGTSSKDTATRATAQYQFTSNTRA 288 Query: 274 NVFDVGVDYA------------------LDAKLHLLASVI--------HDRADLARSGSG 307 + V + A L A+ + A + +L +G+ Sbjct: 289 ELNLVRMKLAESGGAVGRFKSYTHNAWLLTAEHKMNAWAVVGSYGQASAGECELVGAGNC 348 Query: 308 ATRG-HTTQFNLGVDYFLSKRTDVYAMASRQAASAVINPGVISAAYSSA-----PADDSS 361 T G + + ++GV Y LSKRT +Y++ SR SA YS+A P + Sbjct: 349 NTDGLNASMLSMGVFYTLSKRTQLYSLFSRMRNGH-------SANYSNAGDAQPPGVGQN 401 Query: 362 QNVLRIGVRHKF 373 L +G+ H+F Sbjct: 402 LTQLALGISHRF 413 >gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Marseille] Length = 395 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 25 SSVTVYGVIDMSLVYTNKVGPNNSSRMSLDS-GDAMASRIGVRGKEELGGGLAAVFQLEN 83 S++ +YG ID + N + + S G+ +RIG++G E+LGGGL A F LE Sbjct: 58 STINIYGTIDAGIRNVTNTTKNGGDTLKMGSNGEYYNNRIGIKGTEDLGGGLNAHFHLET 117 Query: 84 GFAADDGAM-STPGTLFDRKSVVGLSGRYGTLTLGRQTDYLEEIGLQYSSF-----QIFG 137 GF GA+ + G F+R S VG++G +G++ GR + Y F QI Sbjct: 118 GFNTGTGALDNNAGRFFNRISSVGVAGSFGSIDFGRMPSVSCKTIFAYDPFQYRYVQIVP 177 Query: 138 GGGVRAGHFN------SLDRLTGARTSNSL----RFDTAEVNGFMGSLFYGFGEVAGQTS 187 G AG+ + + G R SN + +FD + + GEV+G S Sbjct: 178 LAGASAGNADGNAPGFPWGTIGGTRFSNDVQYIGKFDNVTILAEFST-----GEVSGSNS 232 Query: 188 AGQAFGVGANYRNGNAGIGAAYYQSK--LAADALPAHAGDSDLKTFTLGASYQA 239 +G A VG YR G IGAAY + K ++ A P + + + T G +YQA Sbjct: 233 SGSAQAVGMTYRPGPFVIGAAYTRQKPNVSITATPEYQQQNQV---TFGGAYQA 283 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 815,956 Number of extensions: 36384 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 9 Length of query: 373 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 288 Effective length of database: 906,776 Effective search space: 261151488 Effective search space used: 261151488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)