BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2864.p (479 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 253 2e-68 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 141 1e-34 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 117 2e-27 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 253 bits (645), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/462 (36%), Positives = 250/462 (54%), Gaps = 10/462 (2%) Query: 11 IGGQLHPGSRLLDSHNPANGQVMGRFPQSDASEVAAAVAAARRAQAAWAAQSLQERREHL 70 I G G D +NPA+G + P A E A+ AA A AWAA++ +ER + Sbjct: 21 INGAWVTGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERAGIM 80 Query: 71 HRVADAIAANAERLATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWTRATASLELASEV 130 D I ANA+ LA L+T EQG+PL + + G+ F W E R + + +AS Sbjct: 81 RIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDV-MAS-- 137 Query: 131 VFEDETRRDELHRKPYGVIAAIAPWNWPLMISIWQVIPAIYAGNTVVLKPSEYTSVCGLE 190 + D +R ++P GV A+I PWN+P+ + +V PAI AG T+V+KP+E T + L Sbjct: 138 TWSD--KRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALA 195 Query: 191 LARVIAQA-LPPGVLNTVSGDG----SVGAMLVEHSDVNKIMFTGSGATGARIVAAAARN 245 +A + +A +PPGV+N V+ D +VG +L V + FTGS G ++ A Sbjct: 196 IAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPT 255 Query: 246 LTPTTMELGGNDAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAKRLYVPDALHDQIVAE 305 + +ELGG+ IV DDAD A G + N GQTC C R YV ++++D V + Sbjct: 256 VKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQK 315 Query: 306 LKAIIAATPMGDGLQPGMAMGPVQNPMQLKKVAALVDSARQEGATIVCGGVLPEGPGNFY 365 L A A +G+G++ G+ GP+ + +KKV V A +GA ++ GG G FY Sbjct: 316 LGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFY 375 Query: 366 PLTLVTDIRDGARLVDEEQFGPVLPIIRYSTLDEAIANANRLDVGLGASVWSRDAQRAAQ 425 T++++I ++ EE FGPV +I++ T DEA+A AN D GL + +SRD R + Sbjct: 376 EPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWR 435 Query: 426 VATRLQAGTVWVNQHGMVHPMVPFGGNKRSGWGLEFGNEGLK 467 VA +L+ G V +N + + + PFGG K+SG G E G++ Sbjct: 436 VAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIE 477 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 135/475 (28%), Positives = 212/475 (44%), Gaps = 26/475 (5%) Query: 18 GSRLLDSHNPANGQVMGRFPQSDASEVAAAVAAARRAQAAWAAQSLQERREHLHRVADAI 77 G R D NPA G+ + + ++V A VA A+ A AWA + +R L + D I Sbjct: 20 GGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLKRARILFKFKDLI 79 Query: 78 AANAERLATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWTRATASLELASEVVFEDETR 137 + + LA +T E G+ + G + C + + F D Sbjct: 80 EKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFAC--------GVPQLLKTQFTDNIG 131 Query: 138 R--DELH-RKPYGVIAAIAPWNWPLMISIWQVIPAIYAGNTVVLKPSEYTSVCGLELARV 194 D + R+P GV A I P+N+P M+ +W A+ GNT +LKPSE L +A + Sbjct: 132 GGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSLMVAEL 191 Query: 195 IAQA-LPPGVLNTVSGDGSVGAMLVEHSDVNKIMFTGSGATGARIVAA-AARNLTPTTME 252 + QA LP GV N + GD L++H DV + F GS I A AAR + Sbjct: 192 LQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAARKGGSYPLR 251 Query: 253 L----GGNDAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAKRLYVPDALHDQIVAELKA 308 + G + +V+ DA+ + L A+ + G+ C + D++VA L Sbjct: 252 VQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKLVAALIP 311 Query: 309 IIAATPMGDGLQPGMAMGPVQNPMQLKKVAALVDSARQEGATIVCGG----VLPEGPGNF 364 + + + +G++ MGPV + K+ +D+ + GA ++ G V G F Sbjct: 312 RVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAGHDKGFF 371 Query: 365 YPLTLVTDIRDGARLVDEEQFGPVLPIIRYSTLDEAIANANRLDVGLGASVWSRDAQRAA 424 L + + EE FGPVL ++R A+ NR + G G S+++ D A Sbjct: 372 LGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTSDGNTAR 431 Query: 425 QVATRLQAGTVWVNQHGMVHPMV--PFGGNKRSGWG--LEFGNEGLKGVTQPQVI 475 + + R++ G V +N V PM FGG KRS +G +G EG+K T+ + I Sbjct: 432 EFSRRVEVGMVGINVPIPV-PMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 485 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 131/474 (27%), Positives = 209/474 (44%), Gaps = 40/474 (8%) Query: 19 SRLLDSHNPAN-GQVMGRFPQSDASEVAAAVAAARRAQAAWAAQSLQERREHLHRVADAI 77 S ++ NPAN V+G Q+DA+ + A+ A W A+ + ER L + AD Sbjct: 597 SACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLF 656 Query: 78 AANAERLATLVTLEQGRPLGGVGPDQVPGSRFELWGCEAWTRATASLELASEVVFEDETR 137 +A L L+ E G+ L P + EL + R ++ +AS+ Sbjct: 657 QQHATELIALLVREAGKTL--------PNAIGELREAIDFLRYYSAQAIASDA------- 701 Query: 138 RDELHRKPYGVIAAIAPWNWPLMISIWQVIPAIYAGNTVVLKPSEYTSVCGLELARVIAQ 197 +P G++A I+PWN+PL I QV A+ A N V+ KP+E T + +++ Q Sbjct: 702 -----NQPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQ 756 Query: 198 A-LPPGVLNTVSGDG-SVGAMLVEHSDVNKIMFTGSGATGARIV-AAAARNLT-----PT 249 A +P L + G G ++GA LV V+ ++FTGS I R+++ P Sbjct: 757 AGVPENALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPL 816 Query: 250 TMELGGNDAAIVLDDADPKAIAPGLFWGAFLNMGQTCACAKRLYVPDALHDQIVAELKAI 309 E GG + IV A + + + AF + GQ C+ + L + D + +Q + L Sbjct: 817 IAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGA 876 Query: 310 IAATPMGDGLQPGMAMGPVQNPMQLKKVAALVDSARQEGATIVCGGVLPEGPGNFYP--L 367 + +G +GPV + + A + A+ G V LP G+F + Sbjct: 877 MQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQ-VRQLPLPVTNGSFVAPCI 935 Query: 368 TLVTDIRDGARLVDEEQFGPVLPIIRY--STLDEAIANANRLDVGLGASVWSRDAQRAAQ 425 + DI + R E FGPVL ++RY L + + + N GL + +R + Sbjct: 936 IEIADINELQR----EVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDY 991 Query: 426 VATRLQAGTVWVNQH--GMVHPMVPFGGNKRSGWGLEFGNEGLKGVTQPQVISL 477 V Q G ++VN++ G V + PFGG SG G + G Q + ISL Sbjct: 992 VVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYLKRLQRESISL 1045 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,151,086 Number of extensions: 46640 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 3 Length of query: 479 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 392 Effective length of database: 899,382 Effective search space: 352557744 Effective search space used: 352557744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)