BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2856.p (726 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 298 8e-82 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 288 1e-78 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 266 3e-72 gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport sy... 256 4e-69 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 252 6e-68 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 298 bits (763), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 203/551 (36%), Positives = 304/551 (55%), Gaps = 21/551 (3%) Query: 178 LVTPLFFQVVMDKVLV---NHAMMTLNVIAV---GLIAATLFEALLAGIRTAIFAKASSK 231 LV P +MD VL+ N + ++A+ GL + LF L RT I A S + Sbjct: 145 LVPPYMTMPLMDNVLIPYQNGVPIDKGLVALYLGGLFGSALFAWGLGWARTYILALVSER 204 Query: 232 IDVELGARLFSHLLSLPLAYFQVRRAGDSIARV-RELENIRSFLTSNAMTLVLDLVFSFI 290 I +L + HLL L L YF +R GD + R+ E + I FL+ + + D++ + Sbjct: 205 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIMM 264 Query: 291 FLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKS----AENQSFLVETL 346 A+++ + L+L+ L +P + ++R +L + F K ++ + L +T+ Sbjct: 265 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDKLRNGFEKVDRIWSQVTNVLADTI 320 Query: 347 TGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTTTNISLLASGSVSLVSKLVGVGIMW-MG 405 G+ VKA A E ++ + + + L S +V+ +++ +G+ ++W +G Sbjct: 321 PGIRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTE-IGLLVVWALG 379 Query: 406 ALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEV-- 463 QV ++VG L AF + + ++++ + Q+ R+ D+LD S V Sbjct: 380 IWQVSQGMITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPE 439 Query: 464 AGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKL 523 A L +V G I + + FRY A VIR L L I PGE+IG+VG SGSGKSTL L Sbjct: 440 ATNPVHLDKVQGKITIKDIGFRYGNRA--VIRGLDLTINPGEMIGLVGHSGSGKSTLVNL 497 Query: 524 VQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEE 583 + R Y +G I VDG D+ I R+ IG+VLQE LF +I DNIA P A E+ Sbjct: 498 ICRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASRED 557 Query: 584 VIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATS 643 +IAAA+ A AH+FI LP GYD++VGE+G LSGG+RQRI+IARAL+ +P ILI DEATS Sbjct: 558 IIAAARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATS 617 Query: 644 ALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLR 703 ++D +E+ IQ + + GRT + IAHRL+ +R ADRI+VM+RG +VE G H+ELL+ Sbjct: 618 SVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLQRE 677 Query: 704 GGIYAHLHALQ 714 G Y A Q Sbjct: 678 GAYYKLYQAQQ 688 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 288 bits (736), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 193/595 (32%), Positives = 323/595 (54%), Gaps = 24/595 (4%) Query: 144 SARFDFSWF---IPAVVKYRKVLGEVLLISLVLQIIGLVTPLFFQVVMDKVLVN----HA 196 S R D+S IP + Y+ +G L + ++ + PL + ++D + + A Sbjct: 15 SNRSDWSTLKTLIPYLWTYKWRVGLALAFLIAAKMANVGVPLVLKRLIDSLTITPGSTQA 74 Query: 197 MMTLNV-IAVGLIAATLFEALLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVR 255 M+ L + I + A L L +R FAK + + + ++F HL SL L + R Sbjct: 75 MLVLPLGILIAYGALRLSTTLFTELREYTFAKVTQRAVRTIALKVFRHLHSLSLRFHLNR 134 Query: 256 RAGDSIARV-RELENIRSFLTSNAMTLV-----LDLVFSFIFLAVMLWYSVPLSLIVLAS 309 + G + R + I S ++ +++ + LV ++ L +W++V ++ + L S Sbjct: 135 QTGGMTRDIERGTKGISSLISYTLFSILPTLIEIVLVLGYLVLHYDIWFTV-ITGVALVS 193 Query: 310 IPVYLLLSLIFTPMLRSRLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPHWQKKWDQQL 369 + ++ + R +ND + A ++ +++L +TVK E + +++D+ L Sbjct: 194 YIAFTVIVTEWRTHFRRTMND-LDSKANTKA--IDSLINYETVKYFGNEDYEARRYDEGL 250 Query: 370 AGYVAAGLTT-TNISLLASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQ 428 Y A + + T++SLL +G S+++ V + I+W V+ +++G+LV N Q Sbjct: 251 KRYETAAVKSQTSLSLLNTGQSSIIAIAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQ 309 Query: 429 VAAPILRLAQLWNDFQQVGISMSRLADVLDARSEVAGQ-RTRLPRVSGA-IAFERVNFRY 486 + P+ L ++ + +Q M RL +LD E+A + T+ GA + F V+F Y Sbjct: 310 LYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIADKPDTQALVTDGAEVRFSHVDFSY 369 Query: 487 RPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIID 546 +++ + I G +VG SGSGKSTL++L+ R Y G I +DGQD+ + Sbjct: 370 EANR-QILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAILIDGQDVRDVT 428 Query: 547 TASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDT 606 SLRQ IG+V Q+ LF+ +I NIA P A +++AAA+ A H+FI LP+GY+T Sbjct: 429 QTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEFIESLPDGYNT 488 Query: 607 LVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTV 666 +VGE+G LSGG++QR+AIAR L+ +P ILIFDEATSALD +SE+ IQ +++I RT Sbjct: 489 MVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQLKEIAQNRTT 548 Query: 667 LIIAHRLTAVREADRILVMERGNVVESGRHEELLRLRGGIYAHLHALQAGQPAAA 721 LIIAHRL+ + +A +ILV+++G ++E G H +LL G YA + Q +P A Sbjct: 549 LIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGA-YAQMWMRQQARPDDA 602 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 266 bits (680), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 192/532 (36%), Positives = 299/532 (56%), Gaps = 12/532 (2%) Query: 195 HAMMTLNVIAVGLIAATLFEALLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQV 254 H ++N + L A+ R + + ++ ++ ++SH+++ +F+ Sbjct: 66 HDTSSINTYFIALFGVACVLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFET 125 Query: 255 RRAGDSIARVRELENIRSFLTSNAMTLVLDLVFSFIFLAVMLWY-SVPLSLIVLASIPVY 313 ++G+ ++R+ + L ++++ L F VML++ S+ LS I+L ++ Sbjct: 126 TQSGEVLSRITTDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVTLAFV 185 Query: 314 LLLSLIFTPMLRSRLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPHWQKKWDQQLAGYV 373 +L + F +R+ D ++ A+ + E L M TV+A E K++ Q + Sbjct: 186 VLPIVWFGRRVRTLSRDSQDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQTVENAF 245 Query: 374 AAGLTTTNI-SLLASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAP 432 + SLL ++ LV + V ++W+GA V+D +S G+L F + + VA Sbjct: 246 KTAMRRIRARSLLTMIAILLVFGAI-VFVLWLGAHAVIDGSMSGGQLGQFILYSAIVAGA 304 Query: 433 ILRLAQLWNDFQQVGISMSRLADVLDARSEVAGQRT--RLP--RVSGA-IAFERVNFRY- 486 I L+++ D Q+ + RL ++L +S ++ T LP R +GA + + V F Y Sbjct: 305 IGALSEVLGDAQRAAGATERLLELLSVQSPISSPATPRSLPPRRANGAALTLDLVTFHYP 364 Query: 487 -RPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAII 545 RP P + LS+ IQ GE + IVG SG+GK++L +L+ R Y + G I +DG DI + Sbjct: 365 SRPLTP-ALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDIREL 423 Query: 546 DTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYD 605 D +LR IG+V Q+ +FS + +NI P A EEVIAAA+LA AH+FI LPEGY Sbjct: 424 DLHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEFIERLPEGYL 483 Query: 606 TLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRT 665 + +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + GRT Sbjct: 484 SFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRT 543 Query: 666 VLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLRGGIYAHLHALQAGQ 717 L+IAHRL V+ ADRI+VME G +VE+G H L+ GG+YA L ALQ GQ Sbjct: 544 TLVIAHRLATVQRADRIIVMEHGKIVETGTHASLVA-AGGLYASLAALQFGQ 594 >gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 612 Score = 256 bits (654), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 182/557 (32%), Positives = 302/557 (54%), Gaps = 7/557 (1%) Query: 159 YRKVLGEVLLISLVLQIIGLVTPLFFQVVMDKVLVNHAMMTLNVIAVGLIAATLFEALLA 218 +R L V+L + I+ ++ P+ + +D V ++ N I + + A+ Sbjct: 40 HRWALVAVVLTVALFTIVQVLIPVTVRYAVDSA-VGNSRYAFNTILAVFASLIVLNAVSN 98 Query: 219 GIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGDSIARVR-ELENIRSFLTSN 277 + + A+ + ++ +L +F+HL + L+ + G ++R++ ++ +++ F+ + Sbjct: 99 FFQEWVAARLAQRVIFDLRRAMFNHLQHVSLSILDQTQVGRLMSRLQGDVNSLQEFMET- 157 Query: 278 AMTLVLDLVFSFIFLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKSAE 337 +++ V D +AV+L V L L+ L +P+ L+ I+ P R S+ Sbjct: 158 SVSAVGDFFLLLGIVAVLLLMDVKLGLLTLCVLPMMFLVRKIWLPWARKAFTRAREASSS 217 Query: 338 NQSFLVETLTGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTTTNISLLASGSVSLVSKLV 397 + L E + G+ TV+ E ++D + + A + ++ S + +V ++ L Sbjct: 218 VNAALAENINGIRTVQENRREIVNFARYDVRAIENLQAQIGSSRASQVMMPTVDTLTGLA 277 Query: 398 GVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVL 457 ++ +G QVV QL VG +VAF + PI L + Q+ S R+ +VL Sbjct: 278 MAIVVVVGGSQVVSGQLDVGVMVAFIFCVQRFFDPIRTLTMQYTVMQRAMASGHRIFEVL 337 Query: 458 DARSEVAGQRTR--LPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGIVGRSGS 515 D ++ ++ L V AI F V F YRP+ P V+ L+L IQP + + +VG +GS Sbjct: 338 DIEVTLSDKKDAQALADVPPAIEFNHVTFGYRPDQP-VLHDLNLHIQPYQTVALVGPTGS 396 Query: 516 GKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALV 575 GK+++A L+ R Y G + V GQD+ + SL Q +G+VLQE LFS +I DN+ Sbjct: 397 GKTSIAALIHRFYDVWDGEVKVGGQDVRDLTLDSLGQCVGMVLQEPFLFSGTIADNMRYG 456 Query: 576 DPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGI 635 A E+VI AAK AHDFI LP+GYDT++G++G LS GQRQ ++ ARAL+ P I Sbjct: 457 LQWATREQVIEAAKAVRAHDFIMRLPDGYDTMLGQRGRNLSIGQRQLLSFARALLAKPKI 516 Query: 636 LIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNVVESGR 695 LI DEAT+ +D +E IQ + + GRT +IIAHRL +R+AD I+V+++G +VE G Sbjct: 517 LILDEATANIDSFTELEIQRALNVLRKGRTTIIIAHRLATIRDADVIVVLQKGRIVEKGS 576 Query: 696 HEELLRLRGGIYAHLHA 712 H+ELL+ + G+YA LHA Sbjct: 577 HDELLKNK-GLYAKLHA 592 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 252 bits (643), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 173/565 (30%), Positives = 288/565 (50%), Gaps = 18/565 (3%) Query: 159 YRKVLGEVLLISLVLQIIGLVTPLFFQVVMDKVLVNHAMMTLNVIAVGLIAATLFEALLA 218 Y+K L LL ++ + + P +V++DK +L ++ V ++ + + Sbjct: 17 YKKRLAVALLGMIMTALTEPMFPAVMRVLLDKGFGGKPSFSLWLVPVAIVGIFVLRGIST 76 Query: 219 GIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGDSI-ARVRELENIRSFLTSN 277 T + SS++ L ++F +L +PL ++ G I + + E++ I +T Sbjct: 77 FTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSMMFEVQQIIEMITKV 136 Query: 278 AMTLVLDLVFSFIFLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKSAE 337 +++ D + + L+ + W + L+L+ L +P+ ++ LR + + E Sbjct: 137 YTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGRRLRRLTREYQTVNGE 196 Query: 338 NQSFLVETLTGMDTVKAMAVEPHWQKKWD---QQLAGYV-----AAGLTTTNISLLASGS 389 + ET +K + +++++ +L GY A TT ++AS + Sbjct: 197 MTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAMAATTPVTQVMASTA 256 Query: 390 VSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGIS 449 V++V + + +Q NQ +VG V+F + P+ +A++ Q+ + Sbjct: 257 VAIV--------IVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQRGLTA 308 Query: 450 MSRLADVLDARSEVAGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGI 509 + ++DA E + R +G + F R+ F Y + ++ ++L +QPGE I Sbjct: 309 AEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQPGETIAF 368 Query: 510 VGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIR 569 VG SG GKSTL LV Y +G I +DG I I +SLR+QI +V Q LF +I Sbjct: 369 VGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVLFDDTIA 428 Query: 570 DNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARAL 629 NIA D ++AAA A + I LPEG +T++G+ G LSGGQRQR+AIARA+ Sbjct: 429 ANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQRLAIARAI 488 Query: 630 ITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGN 689 + ILI DEATSALD ESE+ +Q + ++ GRT L+IAHRL+ + ADRI V+ G+ Sbjct: 489 YKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIERADRIAVLAEGH 548 Query: 690 VVESGRHEELLRLRGGIYAHLHALQ 714 +VE G H+ELL R G+YA+L+ LQ Sbjct: 549 IVELGSHQELLA-RNGVYANLYHLQ 572 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,495,868 Number of extensions: 59217 Number of successful extensions: 465 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 381 Number of HSP's successfully gapped: 59 Length of query: 726 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 636 Effective length of database: 888,291 Effective search space: 564953076 Effective search space used: 564953076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)