BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2852.p (730 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 288 9e-79 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 279 4e-76 gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport sy... 257 2e-69 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 256 4e-69 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 249 6e-67 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 288 bits (737), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 199/550 (36%), Positives = 296/550 (53%), Gaps = 20/550 (3%) Query: 179 LVTPMFFQVVMDKVLV---NNAMTTLNVIAI---GLLAATVFEAVLTAIRTAVFARTSSK 232 LV P +MD VL+ N ++A+ GL + +F L RT + A S + Sbjct: 145 LVPPYMTMPLMDNVLIPYQNGVPIDKGLVALYLGGLFGSALFAWGLGWARTYILALVSER 204 Query: 233 IDVELGARLFKHLLSLPISYFQARRAGDSIARI-RELENIRTFLTSNAMTLVLDLIFSFI 291 I +L ++HLL L + YF +R GD + RI E + I FL+ + + D++ + Sbjct: 205 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIMM 264 Query: 292 FIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK----GAENQAFLVETL 347 A++ + L+L+ L +P + ++R +L F K ++ L +T+ Sbjct: 265 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDKLRNGFEKVDRIWSQVTNVLADTI 320 Query: 348 TGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSVGLISKLVTVGIMWLGA 407 G+ VKA A E R ++ + + + + S +V ++++ + + LG Sbjct: 321 PGIRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTEIGLLVVWALGI 380 Query: 408 KLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLDARSEV--A 465 V + ++VG L AF + + + ++++ + Q+ R+ D+LD S V A Sbjct: 381 WQVSQGMITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEA 440 Query: 466 GQKTRIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLV 525 + K+ G I+ + FRY A VIR + L + PGE+IG+VG SGSGKSTL L+ Sbjct: 441 TNPVHLDKVQGKITIKDIGFRYGNRA--VIRGLDLTINPGEMIGLVGHSGSGKSTLVNLI 498 Query: 526 QRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIRDNIALADPSLPIETI 585 R Y G + VDG D+ I R+ IG+VLQE LF +I DNIA P E I Sbjct: 499 CRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREDI 558 Query: 586 IAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARALIGNPGILIFDEATSA 645 IAAAR A AH+FI LP GYD++VGE G LSGG+RQRI+IARAL+ +P ILI DEATS+ Sbjct: 559 IAAARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSS 618 Query: 646 LDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPN 705 +D +ER IQ + + GRT + IAHRLS +R A RI+VM+RGQI E G H+ELL+ Sbjct: 619 VDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLQ-RE 677 Query: 706 GIYAHLFQLQ 715 G Y L+Q Q Sbjct: 678 GAYYKLYQAQ 687 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 279 bits (714), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 184/579 (31%), Positives = 316/579 (54%), Gaps = 25/579 (4%) Query: 153 FIPSIVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAMT-TLNVIAIGLLAA 211 IP + Y+ + L + ++ + P+ + ++D + + T + V+ +G+L A Sbjct: 26 LIPYLWTYKWRVGLALAFLIAAKMANVGVPLVLKRLIDSLTITPGSTQAMLVLPLGILIA 85 Query: 212 T----VFEAVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARI-R 266 + + T +R FA+ + + + ++F+HL SL + + R+ G I R Sbjct: 86 YGALRLSTTLFTELREYTFAKVTQRAVRTIALKVFRHLHSLSLRFHLNRQTGGMTRDIER 145 Query: 267 ELENIRTFLTSNAMTLV-----LDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIF 321 + I + ++ +++ + L+ ++ + W++V + +++ I ++++ Sbjct: 146 GTKGISSLISYTLFSILPTLIEIVLVLGYLVLHYDIWFTVITGVALVSYIAFTVIVTEWR 205 Query: 322 TPILRA--RLNEKFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLT 379 T R L+ K N A +++L +TVK E +++D+ L Y A + Sbjct: 206 THFRRTMNDLDSKANTKA------IDSLINYETVKYFGNEDYEARRYDEGLKRYETAAVK 259 Query: 380 T-TNIGLVASGSVGLISKLVTVGIMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLA 438 + T++ L+ +G +I+ VT+ I+W + V+ +++G+LV N Q+ P+ L Sbjct: 260 SQTSLSLLNTGQSSIIAIAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLG 318 Query: 439 QLWNDFQQVGISMSRLGDVLDARSEVAGQ-KTRIPKLAGA-ISFHQVCFRYRPDAQDVIR 496 ++ + +Q M RL +LD E+A + T+ GA + F V F Y + Q ++ Sbjct: 319 VIYREIKQSLADMERLFSLLDQNREIADKPDTQALVTDGAEVRFSHVDFSYEANRQ-ILF 377 Query: 497 DVSLQVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIG 556 DV + G +VG SGSGKSTL++L+ R Y ++G + +DGQD+ + SLRQ IG Sbjct: 378 DVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAILIDGQDVRDVTQTSLRQAIG 437 Query: 557 VVLQENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGL 616 +V Q+ VLF+ +I NIA P I+AAA+ A H+FI LP+GY+T+VGE G L Sbjct: 438 IVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEFIESLPDGYNTMVGERGLKL 497 Query: 617 SGGQRQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSA 676 SGG++QR+AIAR L+ +P ILIFDEATSALD +SE+ IQ +++I RT LIIAHRLS Sbjct: 498 SGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQLKEIAQNRTTLIIAHRLST 557 Query: 677 VRDAHRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 + DA +I+V+++G+I E G H +LL G YA ++ Q Sbjct: 558 IADAAQILVLDKGRIIERGTHMQLLA-SEGAYAQMWMRQ 595 >gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 612 Score = 257 bits (656), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 180/558 (32%), Positives = 294/558 (52%), Gaps = 7/558 (1%) Query: 157 IVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAMTTLNVIAIGLLAATVFEA 216 I +R +V V+L + I+ ++ P+ + +D V N+ N I + V A Sbjct: 37 IRPHRWALVAVVLTVALFTIVQVLIPVTVRYAVDSA-VGNSRYAFNTILAVFASLIVLNA 95 Query: 217 VLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARIR-ELENIRTFL 275 V + V AR + ++ +L +F HL + +S + G ++R++ ++ +++ F+ Sbjct: 96 VSNFFQEWVAARLAQRVIFDLRRAMFNHLQHVSLSILDQTQVGRLMSRLQGDVNSLQEFM 155 Query: 276 TSNAMTLVLDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK 335 + +++ V D +AV+ V L L+ L +P+ L+ I+ P R Sbjct: 156 ET-SVSAVGDFFLLLGIVAVLLLMDVKLGLLTLCVLPMMFLVRKIWLPWARKAFTRAREA 214 Query: 336 GAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSVGLIS 395 + A L E + G+ TV+ E ++D + + A + ++ V +V ++ Sbjct: 215 SSSVNAALAENINGIRTVQENRREIVNFARYDVRAIENLQAQIGSSRASQVMMPTVDTLT 274 Query: 396 KLVTVGIMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLG 455 L ++ +G VV QL VG +VAF + PI L + Q+ S R+ Sbjct: 275 GLAMAIVVVVGGSQVVSGQLDVGVMVAFIFCVQRFFDPIRTLTMQYTVMQRAMASGHRIF 334 Query: 456 DVLDARSEVAGQKTR--IPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGR 513 +VLD ++ +K + + AI F+ V F YRPD Q V+ D++L ++P + + +VG Sbjct: 335 EVLDIEVTLSDKKDAQALADVPPAIEFNHVTFGYRPD-QPVLHDLNLHIQPYQTVALVGP 393 Query: 514 SGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIRDNI 573 +GSGK+++ L+ R Y G V V GQD+ + SL Q +G+VLQE LFS +I DN+ Sbjct: 394 TGSGKTSIAALIHRFYDVWDGEVKVGGQDVRDLTLDSLGQCVGMVLQEPFLFSGTIADNM 453 Query: 574 ALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARALIGN 633 E +I AA+ AHDFI LP+GYDT++G+ G LS GQRQ ++ ARAL+ Sbjct: 454 RYGLQWATREQVIEAAKAVRAHDFIMRLPDGYDTMLGQRGRNLSIGQRQLLSFARALLAK 513 Query: 634 PGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQIAE 693 P ILI DEAT+ +D +E IQ + + GRT +IIAHRL+ +RDA I+V+++G+I E Sbjct: 514 PKILILDEATANIDSFTELEIQRALNVLRKGRTTIIIAHRLATIRDADVIVVLQKGRIVE 573 Query: 694 SGRHEELLKIPNGIYAHL 711 G H+ELLK G+YA L Sbjct: 574 KGSHDELLK-NKGLYAKL 590 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 256 bits (653), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 182/570 (31%), Positives = 297/570 (52%), Gaps = 28/570 (4%) Query: 160 YRKMIVEVLLLSLVLQIIGLVTPMF---FQVVMDKVLVNNAMTTLNVIAIGLLAATVFEA 216 Y+K + V LL +++ L PMF +V++DK +L ++ + ++ V Sbjct: 17 YKKRLA-VALLGMIMT--ALTEPMFPAVMRVLLDKGFGGKPSFSLWLVPVAIVGIFVLRG 73 Query: 217 VLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSI-ARIRELENIRTFL 275 + T T + SS++ L ++F+ +L +P+ ++ G I + + E++ I + Sbjct: 74 ISTFTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSMMFEVQQIIEMI 133 Query: 276 TSNAMTLVLDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK 335 T +++ D + + ++ +FW + L+L+ L +P+ ++ LR E Sbjct: 134 TKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGRRLRRLTREYQTV 193 Query: 336 GAENQAFLVETLTGMDTVKAMA----VEPRWQQKWDQ------QLAAYVAAGLTTTNIGL 385 E + ET +K E R++ + D+ ++A +AA TT + Sbjct: 194 NGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAMAA--TTPVTQV 251 Query: 386 VASGSVGLISKLVTVGIMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQ 445 +AS +V ++ + + ++ G +NQ +VG V+F + +P+ +A++ Q Sbjct: 252 MASTAVAIV---IVIALIQSG-----QNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQ 303 Query: 446 QVGISMSRLGDVLDARSEVAGQKTRIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPG 505 + + + ++DA E K + AG + F ++ F Y ++D++L V+PG Sbjct: 304 RGLTAAEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQPG 363 Query: 506 EVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLF 565 E I VG SG GKSTL LV Y G + +DG I I +SLR+QI +V Q VLF Sbjct: 364 ETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVLF 423 Query: 566 SRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIA 625 +I NIA D + I+AAA A + I LPEG +T++G++GS LSGGQRQR+A Sbjct: 424 DDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQRLA 483 Query: 626 IARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIV 685 IARA+ + ILI DEATSALD ESER +Q + ++ GRT L+IAHRLS + A RI V Sbjct: 484 IARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIERADRIAV 543 Query: 686 MERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 + G I E G H+ELL NG+YA+L+ LQ Sbjct: 544 LAEGHIVELGSHQELLA-RNGVYANLYHLQ 572 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 249 bits (635), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 194/575 (33%), Positives = 315/575 (54%), Gaps = 23/575 (4%) Query: 157 IVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAM---TTLNVIAIGLLAATV 213 ++ Y+K V + +V L P F+ ++D N M +++N I L Sbjct: 24 LLPYKKQFVLAGIALIVAAAATLAIPYAFRQMIDLGFGANGMHDTSSINTYFIALFGVAC 83 Query: 214 FEAVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARIR-ELENIR 272 A+ TA R + + ++ ++ ++ H+++ +F+ ++G+ ++RI + I+ Sbjct: 84 VLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRITTDTTLIQ 143 Query: 273 TFL-TSNAMTLVLDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNE 331 T + TS +M L L+F+ + ++F+ S+ LS I+L ++ +L + F +R + Sbjct: 144 TLIGTSISMALRNALLFAGGLV-MLFFTSIKLSSIILVTLAFVVLPIVWFGRRVRTLSRD 202 Query: 332 KFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSV 391 ++ A+ A E L M TV+A E +++ Q V T + A + Sbjct: 203 SQDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQT----VENAFKTAMRRIRARSLL 258 Query: 392 GLISKLVTVG----IMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQV 447 +I+ L+ G ++WLGA V++ +S G+L F + + V+ I L+++ D Q+ Sbjct: 259 TMIAILLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFILYSAIVAGAIGALSEVLGDAQRA 318 Query: 448 GISMSRLGDVLDARSEV---AGQKTRIPKLA--GAISFHQVCFRY--RPDAQDVIRDVSL 500 + RL ++L +S + A ++ P+ A A++ V F Y RP + ++S+ Sbjct: 319 AGATERLLELLSVQSPISSPATPRSLPPRRANGAALTLDLVTFHYPSRP-LTPALSNLSV 377 Query: 501 QVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQ 560 ++ GE + IVG SG+GK++L +L+ R Y G + +DG DI +D +LR IG+V Q Sbjct: 378 SIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDIRELDLHALRNTIGIVPQ 437 Query: 561 ENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQ 620 + V+FS + +NI P E +IAAARLA AH+FI LPEGY + +GE G LSGGQ Sbjct: 438 DTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEFIERLPEGYLSFLGERGVRLSGGQ 497 Query: 621 RQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDA 680 RQRIAIARAL+ NP +L+ DEATSALD ESER++Q + GRT L+IAHRL+ V+ A Sbjct: 498 RQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRA 557 Query: 681 HRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 RIIVME G+I E+G H L+ G+YA L LQ Sbjct: 558 DRIIVMEHGKIVETGTHASLVA-AGGLYASLAALQ 591 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,541,871 Number of extensions: 62293 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 403 Number of HSP's successfully gapped: 60 Length of query: 730 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 640 Effective length of database: 888,291 Effective search space: 568506240 Effective search space used: 568506240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)