BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2850.p
         (488 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981557|ref|YP_001354624.1| outer membrane protein, tolC-li...    88   1e-18

>gi|152981557|ref|YP_001354624.1| outer membrane protein, tolC-like
           [Janthinobacterium sp. Marseille]
          Length = 434

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 198/428 (46%), Gaps = 37/428 (8%)

Query: 68  AGMVLPL-AQAVDW------ALCHNAQVQMAWANIKIQAAQVGEARAAYLPTLSAGVNQS 120
           AG  L L AQAV+       AL ++A    A AN+        + RA  LP +  G++ +
Sbjct: 11  AGAFLTLQAQAVNLLQLYQDALVNDAVYSSARANLSAGREASVQGRANLLPLI--GISGT 68

Query: 121 STHAEYADNAFQVNRRQSNRSHYYTLTWRLLDAGARSAKRRAADALLDAASASHDAAI-- 178
             HA+  DN   +     +R +  +L+  LLD  A     ++    L  AS+    AI  
Sbjct: 69  YQHAQR-DNVPDIK----SRGYTLSLSQPLLDVAAWQNYEQSK---LSVASSEAAFAIVQ 120

Query: 179 QRLLTSVISLYFEAQTASANLVARQRGESLARETLAVARRREARGLGAKTDTLQAQTSLA 238
           Q L+  V   YF+   A   L A    +    E LA A+R    G    TDT +AQ   A
Sbjct: 121 QDLILRVAQAYFDVLAAQDTLAALLVQKDAISEQLASAKRNFEVGTATITDTHEAQ---A 177

Query: 239 KAELERARAMG-QYKKAL--TALMVVIGLQAQDVPGMALAADMEDEQSTLEQDLADWLEA 295
           + +L  A+  G Q   A+  TAL  +IG    ++  +    ++   +      +  W+ +
Sbjct: 178 RYDLVIAQEFGAQNDLAIKRTALQQIIGKPPAELATLRQGVELSAPEPA---QINTWVSS 234

Query: 296 ARQQHPAILAARSRLEAARNKLEATRADGLPTVDLSASRYFNGRPNQA------GTLTQG 349
           A +Q+  +L  +  LE A+ ++   RA   PTVDL ASR  + + N A      GT   G
Sbjct: 235 AEEQNYVVLQQKLALEIAKREITRNRAGHYPTVDLVASRSDSNQRNSAIPSLNSGT---G 291

Query: 350 RETVVGVSLNIPLFDGFSHTYKVRGAQGQIELKEAELRETQSQILGDIAVAHAEATAALA 409
             + +G+  NIPLF GF+ T +VR A    +   ++L   +     +   A+   T+ LA
Sbjct: 292 PTSAIGLQWNIPLFSGFAVTSRVRQAIALEDKSRSDLESARRFAAQNAQQAYLGVTSGLA 351

Query: 410 SLVSSQALLDAARHALENVQRRYDRGIADIVEMLNVQAALADAEQERVRSLADWRSARLR 469
            + + QA   ++R ALE+ +  Y  G+   +++LN Q  L   +++  ++  D     LR
Sbjct: 352 QVKALQAAEVSSRSALESNRLGYQVGVRINIDVLNAQQQLFITQRDLSKARYDTLMNSLR 411

Query: 470 LLASAGTL 477
           L ++AG+L
Sbjct: 412 LKSAAGSL 419


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 930,492
Number of extensions: 33572
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 9
Length of query: 488
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 401
Effective length of database: 899,382
Effective search space: 360652182
Effective search space used: 360652182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)