BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2849.p (479 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 97 3e-21 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 92 5e-20 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 80 4e-16 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 79 5e-16 gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 76 4e-15 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 161/399 (40%), Gaps = 44/399 (11%) Query: 33 PLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGLVDSVVG 92 PL+ + AI + + G L + LP R LA+ L + TV AY + H G ++ VG Sbjct: 23 PLHARVQRAIRQLILDGALDVGRPLPASRALAQSLGVSRDTVESAYGQLHAEGFIERRVG 82 Query: 93 RGTFVCGKRRPR----------IPRVTEGRPNV------------DMSMNMPPEPESSEL 130 G++V + + + R T R + D P P E Sbjct: 83 SGSYVSERMQRLPGRGRPRRTVVERGTTTRLSQRGKAMFQSGGVRDFFTPRPFAPGVPET 142 Query: 131 VALMQAGWNKVNGKLRDLMRYQDFGGSA--EDREAGALWLRR---------RGLVVEPQR 179 + W ++ ++ +++G A G LRR RG P+R Sbjct: 143 RSFPLQTWERLQRQV-----LKEYGTQALLHSPPQGMEQLRRAIADYVNLERGARASPER 197 Query: 180 LLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEG--IDA 237 +LV +Q AL T+L+ G + ED Y G R G++ V +P+D +G ++ Sbjct: 198 VLVLTSSQQALTLCATVLLDAGERIFIEDPVYHGARKAFDAAGLECVPVPLDADGLRVER 257 Query: 238 VAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLPRT 297 + P+A++ P+ PT T +L RR A++E AR + IIEDD Sbjct: 258 MLELAQTTDQVPRAVFLTPSHQFPTGATLALDRRLAVIEWARQQQGWIIEDDYDSEFHYD 317 Query: 298 APPAIASLG---SELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPI 354 P G E T Y+ KS+ GLRI Y+V P + A +T + ++PI Sbjct: 318 GKPTACVQGLDQYERTIYIGTFTKSLFPGLRIGYMVLP-SQLVAPMTVARTLLDGHSAPI 376 Query: 355 TSTLATHWIRDGVADLALANIRKESMARQKIAARILPEH 393 +I G + +R R+ + R++ H Sbjct: 377 PQLTLARFIEGGHFGAHIRTMRAVYAERRDVLVRLVRLH 415 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 113/452 (25%), Positives = 189/452 (41%), Gaps = 37/452 (8%) Query: 34 LYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGLVDSVVGR 93 LY +A +A+ + G L+ RLP R+ + A+ +TV +AY RGL+ + Sbjct: 3 LYETLAAELAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERS 62 Query: 94 GTFVCGKRRPRIPRVTEG-RPN-----VDMSMNMPPEPESSELVALMQAG---------- 137 G +V G + P + +PN VD+S + ES+++ L+ G Sbjct: 63 GYYVAGAAQKLPPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFPSPLLFP 122 Query: 138 WNKVNGKLRDLMRYQDFGGSAEDREAGALWLRRR--------GLVVEPQRLLVTPGAQCA 189 ++ + ++ D + +D G LRR+ GL + +++T GA A Sbjct: 123 MARLARAMASSVQQLDPWSAVDDLTPGNPQLRRQIALRYLADGLHIHTDEIVITNGALDA 182 Query: 190 LLAILTMLVGPGGVLCCEDVT-YPGLRALAGQLGIKLVGLPMD-NEGIDAVAFAGACAQY 247 L L + PG + E T Y L+AL G+ + +P EGID A A A ++ Sbjct: 183 LNLCLAAVTRPGDAVLVESPTFYAALQALERN-GLHAIEVPTHPREGIDLAALARAIERH 241 Query: 248 APKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYG---FLPRTAPPAIAS 304 PKA + T NP +++ LV + +E+ +IEDD YG F + PA A Sbjct: 242 QPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPMPAKAF 301 Query: 305 LGSELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIR 364 L + + +K + G R+ + AP + A L TT+ AS ++ Sbjct: 302 DSKGLVMHCSSFSKCLAPGYRVGW-AAPGRFTRAVARRKL-TTTLAASAPAQAALATYLE 359 Query: 365 DGVADLALANIRKESMARQ----KIAARILPEHSYASEPE-AFHLWIKLRGGWQASSFAA 419 G D L +R +Q + AR P + A+ P+ + LW++L A Sbjct: 360 KGGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWLELPAKVNALELHR 419 Query: 420 QMRSSGIGVVASDAFAVSAAPEQAVRVCIGGI 451 Q + GI + F+ +R+ G + Sbjct: 420 QALAQGISLAPGPIFSAHHGFTNCIRLNYGHV 451 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 169/416 (40%), Gaps = 49/416 (11%) Query: 34 LYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGLVDSVVGR 93 LY +A I E + G +P +RLP R+ ++ L TTV A+ +G+++S Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 94 GTFVCGKRRPRIPRVTEGRPNVDMSMNMP----PEPESSELV-ALMQAGWN--------- 139 G FV R P P+ G+ ++ + P + + S LV + +++ N Sbjct: 63 GYFV---RVP--PQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPLGSPY 117 Query: 140 ---------KVNGKLRDLMRYQDFGGSAEDREAGALWLRRR--------GLVVEPQRLLV 182 K+N + R Q G + G L R+ G ++P ++V Sbjct: 118 PDPSLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVV 177 Query: 183 TPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMD-NEGIDAVAFA 241 T GA A+ L + G ++ E T+ + ++G++ + + EGID A Sbjct: 178 TVGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAALE 237 Query: 242 GACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYG--FLPRTAP 299 Q+ A P NP +++ALVE+ +V +IE+D Y + P Sbjct: 238 AILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGDVHP 297 Query: 300 PAIASLGSE-LTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTL 358 ++ S +E L + +KS+ + RI + + L+ + +P L Sbjct: 298 TSLKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGRYRDQVE---KLKFLNTLTTPTIPQL 354 Query: 359 AT-HWIRDGVADLALANIRKESMARQKI----AARILPEHSYASEPE-AFHLWIKL 408 A ++ + L +IRK + I R PE + SEP+ + LW++L Sbjct: 355 AIAEYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVEL 410 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 16/307 (5%) Query: 112 RPNVDMSMNMPPEPESSELVALMQAGWNKV---NGKLRDLMRYQDFGGSAEDREAGALWL 168 RP++ P PE+ V M+A ++ V GK+ ++Y G A RE A L Sbjct: 34 RPDIISFAGGLPSPETFP-VEHMKAAFDNVLSRQGKIA--LQYGPSDGYAPLREWIADSL 90 Query: 169 RRRGLVVEPQRLLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGL 228 G + P ++L+ G+Q AL + +L+ + E +Y G + V + Sbjct: 91 SIEGATITPDQVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSV 150 Query: 229 PMDNEGIDAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIED 288 P D+ G+ A G + LY P NPT T S+ RR ALVE + +IED Sbjct: 151 PTDDYGLLPEAVDGIAD--GARLLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIED 208 Query: 289 DAYGFLP-RTAP-PAIASLGSELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRA 346 D YG L R P P + ++ Y+ +K + G+R+ Y+V P +L + +A Sbjct: 209 DPYGALSYRAEPLPKMLTMNPSGVIYMGSFSKVLTPGIRLGYVVGP-TPLIRKLEQAKQA 267 Query: 347 TTVMASPITSTLATHWIRDGVADLALANIRKESMARQKIA----ARILPEHSYASEPE-A 401 + S +T + I+DG + +IR + ++ A PE ++PE Sbjct: 268 ADLHTSQLTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGG 327 Query: 402 FHLWIKL 408 +W+ L Sbjct: 328 MFIWVTL 334 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 118/464 (25%), Positives = 182/464 (39%), Gaps = 34/464 (7%) Query: 33 PLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGLVDSVVG 92 P+YL I + G L R+P R LA + L TV AY G + Sbjct: 19 PMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTVEMAYRILTDEGYLQVRGA 78 Query: 93 RGTFVCGKRRPRIPRVTEGRPNVDM----------SMNMPPEPESSELVALM---QAGWN 139 GT V P +P+ +P M P+P L AL + WN Sbjct: 79 AGTIVS----PSLPQPAASKPLTPMPGQTVSAFLDHDGKAPKPLQLGLPALDAFPRKVWN 134 Query: 140 KVNG-KLRD----LMRYQDFGGSAEDREAGALWLR-RRGLVVEPQRLLVTPGAQCALLAI 193 ++ G +LR + Y D G RE A +L RG+ P+++ +T G + L Sbjct: 135 RLVGHRLRGSEPARLGYPDPAGYDRLRERIATYLGVSRGVTCLPEQVFITTGLRNTLELT 194 Query: 194 LTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGIDAVAFAGACAQYAPKALY 253 L+ L G ED Y R +K+V +P+D G+ V + YA A+ Sbjct: 195 LSSLSTSGDEFWFEDPGYILARPFLQNAAVKVVPVPVDGNGL-IVEEGKRLSPYAKFAM- 252 Query: 254 CNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYG-FLPRTAP-PAIASLG-SELT 310 P+ +P T SL RR AL+E A IIEDD F + P PA+ SL ++ Sbjct: 253 VTPSHQSPLGVTLSLERRMALLEWASEAGSWIIEDDYDSEFRYQGRPLPALKSLDRNDRV 312 Query: 311 FYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIRDGVADL 370 Y +K + GLR+AY+VAP S+ AR + + +I +G Sbjct: 313 IYSGTFSKVMFPGLRLAYVVAP-VSAVARFQSVSYNLNAGCPYLFQASVADFIAEGHFSR 371 Query: 371 ALANIRKESMARQKIAARILPE-----HSYASEPEAFHLWIKLRGGWQASSFAAQMRSSG 425 L +R R+ + ++ E P H+ KL A + R +G Sbjct: 372 HLKKMRSLYAERRLVTQQVFQEVLGDRIRIDLRPGGLHMLAKLGEHENDVLLADKAREAG 431 Query: 426 IGVVASDAFAVSAAPEQAVRVCIGGIASRHDIQHALEVIRDALN 469 + + + V+A P+Q + + + D + ++ AL Sbjct: 432 LALHPLSRWYVNAKPQQGLLLGFANVVDEKDAKRIALKLKQALE 475 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,007,387 Number of extensions: 38489 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 7 Length of query: 479 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 392 Effective length of database: 899,382 Effective search space: 352557744 Effective search space used: 352557744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)