BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2840.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981120|ref|YP_001354038.1| transcriptional regulator [Jant... 186 1e-48 gi|152982990|ref|YP_001354510.1| AraC family transcriptional reg... 180 1e-46 gi|152981032|ref|YP_001351912.1| AraC family transcriptional reg... 171 7e-44 gi|152981191|ref|YP_001354772.1| AraC family transcriptional reg... 167 1e-42 gi|152981075|ref|YP_001354771.1| AraC family transcriptional reg... 160 1e-40 >gi|152981120|ref|YP_001354038.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 186 bits (473), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 5/312 (1%) Query: 3 HIGYLLTDGFQIMGLATQS-VF-EYANKVAGEDFYALHNFSVAGGSVLSSLGMSITTTPA 60 + L G Q++ +A + VF E A ++ Y + G SS G+ +T Sbjct: 4 QVAVLAFPGVQLLDIAGPADVFMEAARQLNDARAYRVQIIGTESGPFKSSSGLYVTPDAT 63 Query: 61 SQA--DHMDSWMICGVADPLASPASPDERSFLQRTGKSARRIAAICTGGFVLAEAGLLAK 118 Q +D+ M+ G D + ++L++ KS RRI ++CTG +L AGLL Sbjct: 64 LQTFRGGIDTLMVAGSPDTDVITENSTRDAWLKKRAKSVRRIGSVCTGALILGMAGLLEG 123 Query: 119 RRATTHWFFAREMQARFPEIQVEHDRIYIVDGPIWTSAGMTAGLDMALAMVAKDLGEEVA 178 +R TTHW A ++ FP+ +V+ D IY+ DG ++TSAG+TAG+D+ALAMV +D G E+A Sbjct: 124 KRITTHWSSAEKLATMFPQTEVDPDCIYLRDGNLYTSAGVTAGMDLALAMVEEDHGRELA 183 Query: 179 RGVAHKLVMHQHRTGGQTQHSEMLALA-PKTDRIQNALNYARKNLMRPLTVEELAEEANL 237 VA ++VM R GGQ+Q S LA + I Y NL L+V +LAE A + Sbjct: 184 LKVAREMVMFVKRPGGQSQFSSHLAAQHTEGSTIGQIQAYVLANLRADLSVPQLAERARM 243 Query: 238 SPRQFSRVFSAETGLSPSKAIEGLRLEAARLMIEQSRHSLEVIARETGFRDRRHMREVFI 297 S R F+R F AE+G +P+ +E RL+ AR +IE+ L+ IA+ GF + MR+ F+ Sbjct: 244 SERSFARTFKAESGSTPASFVEAARLDQARRLIEEQSQPLKRIAQLCGFSNLDAMRKAFM 303 Query: 298 RGYGVAPQMMRR 309 R + P RR Sbjct: 304 RRISIGPAEYRR 315 >gi|152982990|ref|YP_001354510.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 332 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 22/323 (6%) Query: 1 MHHIGYLLTDGFQIM-GLATQSVFEYANKVAGEDFYALHNFSVAGGS----VLSSLGMSI 55 M + ++ GF+ + + VF+Y NK L +AGG V + +GM Sbjct: 10 MLAVDIIVYPGFKALEAIGPMKVFDYTNK-------HLRKLGLAGGYQVNIVSNKVGMVA 62 Query: 56 TTTPAS--QADHMDSWMICGVADPLASP-------ASPDERSFLQRTGKSARRIAAICTG 106 + T S + +W + +A + SP SP+ ++ R+AA+CTG Sbjct: 63 SDTLMSLYAGKAISAWTLPDLALIVGSPDIEDALEESPEIVDWITSVASRIGRLAALCTG 122 Query: 107 GFVLAEAGLLAKRRATTHWFFAREMQARFPEIQVEHDRIYIVDGPIWTSAGMTAGLDMAL 166 F LA AG+L RR +THW F ++ +PE+ V+ D I+I +G IWTSAG+TA +D+ L Sbjct: 123 SFFLAAAGVLNGRRVSTHWGFVERLRNMYPEVIVDADAIFIREGNIWTSAGVTAAMDLTL 182 Query: 167 AMVAKDLGEEVARGVAHKLVMHQHRTGGQTQHSEMLALAPKT-DRIQNALNYARKNLMRP 225 A+V +D G EVA VA LV++ R GGQ+Q S L+ T I+ N+ +L Sbjct: 183 ALVEEDFGREVALEVARDLVIYLKRPGGQSQFSVHLSSQMNTHPTIRELQNWIMSHLEGE 242 Query: 226 LTVEELAEEANLSPRQFSRVFSAETGLSPSKAIEGLRLEAARLMIEQSRHSLEVIARETG 285 LTV LA+ +S R F+RVF E G SP+ IE R EAAR M+E + L++I +TG Sbjct: 243 LTVPRLAQRMAMSERNFARVFHREAGESPADFIERARFEAARRMLEGDKLPLKLIVGKTG 302 Query: 286 FRDRRHMREVFIRGYGVAPQMMR 308 F MR VF + G+ P+ R Sbjct: 303 FGTEEKMRRVFKKKVGLTPKTYR 325 >gi|152981032|ref|YP_001351912.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 171 bits (432), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 114/327 (34%), Positives = 174/327 (53%), Gaps = 36/327 (11%) Query: 4 IGYLLTDGFQIM-GLATQSVFEYANKVAGEDFYALHNFSVAGGSVLSSLGMSITTTPASQ 62 + ++ GF+ + + SVFEYAN LH G+ +S P Sbjct: 12 VDIIIYPGFKALEAIGPLSVFEYAN---------LHLQRQRKGNGYDVRFVSTGVGPVQS 62 Query: 63 ADHMDSWMICGVADPLASPASPDE---------RSFLQRTGK----------SARRIAAI 103 D+ M+ A +++ A PD+ + L+ G R+AA+ Sbjct: 63 ----DTQMVLHAAKAVSNLALPDDAIIVGARNIQGALENAGPIVDWIVAVHPQINRLAAL 118 Query: 104 CTGGFVLAEAGLLAKRRATTHWFFAREMQARFPEIQVEHDRIYIVDGPIWTSAGMTAGLD 163 C+G F LA AG+L +RATTHW A+ +Q +FP I+V+ + I++ G +WTSAG+TAG+D Sbjct: 119 CSGAFFLASAGVLEGKRATTHWSVAQMLQEQFPAIEVDANAIFVRSGNLWTSAGVTAGID 178 Query: 164 MALAMVAKDLGEEVARGVAHKLVMHQHRTGGQTQHSEMLALAPKTDR--IQNALNYARKN 221 +ALA V +D G E+A VA +V++ R GGQ+Q S L L+ KT R I+ N+ +N Sbjct: 179 LALAFVEEDFGRELALDVATDMVVYLKRPGGQSQFSTHL-LSQKTARPNIREVQNWILEN 237 Query: 222 LMRPLTVEELAEEANLSPRQFSRVFSAETGLSPSKAIEGLRLEAARLMIEQSRHSLEVIA 281 L + L+ LA++A +S R F+RVF E G S + IE RLE A+ ++ ++ IA Sbjct: 238 LDQRLSSTTLAQKAMMSVRNFARVFQQEVGQSSQEFIEASRLELAKQLLADVALPIKKIA 297 Query: 282 RETGFRDRRHMREVFIRGYGVAPQMMR 308 +GF D HMR VF + G+ P++ R Sbjct: 298 ALSGFTDDDHMRRVFQKRLGITPKVYR 324 >gi|152981191|ref|YP_001354772.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 328 Score = 167 bits (422), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 105/317 (33%), Positives = 165/317 (52%), Gaps = 11/317 (3%) Query: 4 IGYLLTDGFQIMGLAT--QSVFEYANKVAGEDFYALHNFSVAGGSVLSSLGMSITT--TP 59 IG ++ FQ++ +A + E GE Y + + G + SS G++I T Sbjct: 6 IGLVVFPRFQMLDIAAPGDAFAEVKVLSNGECEYEILTIATTRGPIQSSSGLTIMPDRTI 65 Query: 60 ASQADHMDSWMI---CGVADPLASPASPDERSFLQRTGKSARRIAAICTGGFVLAEAGLL 116 H D+ ++ GV D L D +L G+ RRI AIC G F L AG++ Sbjct: 66 FDPCPHFDTLIVPGGLGVFDILEDTTLTD---WLAAQGEGCRRIGAICNGVFALGAAGMI 122 Query: 117 AKRRATTHWFFAREMQARFPEIQVEHDRIYIVDGPIWTSAGMTAGLDMALAMVAKDLGEE 176 + TTHW A + + F + VE DRIY+ D ++T+AG+TAG+D++LA++ +D G++ Sbjct: 123 NGKTVTTHWMDAARLASMFRKATVEPDRIYVKDDSLYTTAGVTAGIDLSLALIEEDFGKQ 182 Query: 177 VARGVAHKLVMHQHRTGGQTQHSEMLALAPKTDRIQNAL-NYARKNLMRPLTVEELAEEA 235 +A VA L+++ R GGQ+Q S +L + K D A+ NY NL T+ +A+E Sbjct: 183 MALDVAKYLIVYLRRAGGQSQFSPLLEVQVKNDSPVAAVQNYVLNNLNVEHTLLSIADEM 242 Query: 236 NLSPRQFSRVFSAETGLSPSKAIEGLRLEAARLMIEQSRHSLEVIARETGFRDRRHMREV 295 +S R SR+F ETGL+ + R++AAR +E + L IAR G + +R + Sbjct: 243 QMSARNLSRIFKQETGLTLMNFVNDARIDAARRYLESTDLGLTDIARRCGLTNAATLRRI 302 Query: 296 FIRGYGVAPQMMRREGR 312 F + G+ P R+ R Sbjct: 303 FSKRLGIGPSDYRQRFR 319 >gi|152981075|ref|YP_001354771.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 322 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 5/218 (2%) Query: 92 RTGKSARRIAAICTGGFVLAEAGLLAKRRATTHWFFAREMQARFPEIQVEHDRIYIVDGP 151 R+GK +IC G F+LA AGLL + TTHW A + FP V+ DRI++ DG Sbjct: 100 RSGK----YGSICNGAFLLAHAGLLNGKTITTHWNDAALLARMFPATTVDADRIFLQDGN 155 Query: 152 IWTSAGMTAGLDMALAMVAKDLGEEVARGVAHKLVMHQHRTGGQTQHSEMLA-LAPKTDR 210 ++TSAG+TAG+D++L +++++ G EV+ VA +LV+ R GGQ+Q S L A ++ Sbjct: 156 LYTSAGVTAGIDLSLYLLSQESGAEVSLNVAKRLVVFMQRRGGQSQFSPYLTPYAEESSP 215 Query: 211 IQNALNYARKNLMRPLTVEELAEEANLSPRQFSRVFSAETGLSPSKAIEGLRLEAARLMI 270 + Y NL + L+VE LA +SPR F+R+F +T ++P++ IE RL+AAR ++ Sbjct: 216 VSMVQQYVLANLQQELSVEILARTVAMSPRNFARIFVRDTKITPAEFIESARLDAARALL 275 Query: 271 EQSRHSLEVIARETGFRDRRHMREVFIRGYGVAPQMMR 308 E S ++ IA GF + MR VF++ G+ R Sbjct: 276 EASNDPMKKIAYLCGFHNANQMRNVFVKRLGITAMQYR 313 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 693,158 Number of extensions: 26138 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 7 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)