BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2838.p (556 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino... 224 9e-60 gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janth... 169 5e-43 gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas... 102 5e-23 >gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 664 Score = 224 bits (572), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 176/578 (30%), Positives = 267/578 (46%), Gaps = 50/578 (8%) Query: 21 RIEALREQFRGDFETG-INACVECCDRHI---QGDKIALDFVSIHGQHHPYSFAQIRSMA 76 R++ F FE G +N C DRH+ DK+AL F S G+ ++ ++ Sbjct: 68 RLDESNAPFYKWFEDGELNVSYNCLDRHLTNGNADKVALIFESDDGKVTRVTYKELYERV 127 Query: 77 SRVANLLKQQGIQPGQIVAGMLPRTPELLATVLGTLRAGAVYQPLFTAFGPKAIEHRLAL 136 + AN LK+ GIQ G V +P + E +A + R GA + +F F K+++ R+ Sbjct: 128 CKFANGLKELGIQKGDRVIIYMPMSIEGVAAMQACARIGATHSVVFGGFSAKSLQERIID 187 Query: 137 SGARLIVT---------NVANRAKLDEIAHCPQVCTVRESSDPLRTG---------DIDF 178 +GA ++T N+ ++ +DE T+R RTG DI Sbjct: 188 AGAVAVLTSDYQVRGGKNLPLKSIVDEALALGGCDTIRNVVVYKRTGGEMNFVAGRDIWL 247 Query: 179 RAAVDAQSDDFAPVMRSGSDLMFMMSTSGTTGAAKGVPVPLSALQAFAVY-MRQAVGLLP 237 VD Q + PV +F++ TSG+TG KGV +A+ M+ + + P Sbjct: 248 HDLVDKQKAECEPVPVGAEHPLFILYTSGSTGKPKGVQHSSGGYLLWAMLTMKWSFDIKP 307 Query: 238 QDKFWNMADPGWAYGLYYAIIGPLAIGQGITFNEAA--FTVQGS-YELIRRLGITSLAGA 294 D +W AD GW G Y GPLA G E F G ++++++ +T A Sbjct: 308 NDVYWCTADIGWITGHTYVTYGPLACGATQIVFEGVPMFPNAGRFWDMVQKHKVTIFYTA 367 Query: 295 PTAYRMMMAAGEEAAASVKGQ-----LRAVSSAGEPLNAEVVRWFASALD---VPIHDHY 346 PTA R ++ A + A + LR + S GEP+N E W+ + PI D + Sbjct: 368 PTAIRSLIKAADADPAVHPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIADTF 427 Query: 347 GQTELGMVVNNHHALQHEVVPGSAGFAMPGYRVVVLDDNLQELGANQPGELAI------- 399 QTE G V + +VPGS +PG V+D+ +L + G L I Sbjct: 428 WQTETGGHVISPMPGATPMVPGSCTLPLPGIAAAVVDEVGHDLANGKGGLLVIKRPWPSM 487 Query: 400 --DIARSPLFWFSGYWKQETPAIAGGYYATGDN-VELEKNGSISFIGRSDDVITSAGYRI 456 +I P + Y+ E + G Y GD + E+ G + GR DDV+ +G+R+ Sbjct: 488 IRNIWNDPERFQKSYFPHE---LGGTIYLAGDGAIRNEETGYFTITGRIDDVLNISGHRM 544 Query: 457 GPFDVESALLEHPAVADVAVIGLPDPERTEIVKAFVVLSDKFKASDE---LAEQLAQHVK 513 G ++ESAL+ +P VA+ AV+G PD E + AFVVL DE +A++L V Sbjct: 545 GTMEIESALVANPIVAEAAVVGKPDETTGESICAFVVLKRSRPTGDEAKQIAKELRDWVA 604 Query: 514 RRLSAHAYPRAIEFVDALPKTPSGKLQRFVLRKMEADR 551 + + A P+ I F D LPKT SGK+ R +LR + D Sbjct: 605 KEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKDE 642 >gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 634 Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 155/553 (28%), Positives = 247/553 (44%), Gaps = 58/553 (10%) Query: 38 NACVECCDRHI--QGDKIALDFVSIHGQHHPYSF-AQIRSMASRVANLLKQQGIQPGQIV 94 N C DRH+ + D+ AL +S AQ+ + SR A +++ G+ G V Sbjct: 57 NLCYNAVDRHLATRADQPALVAISTETDTETTYTYAQLHAEVSRSAAMMQALGVGQGDRV 116 Query: 95 AGMLPRTPELLATVLGTLRAGAVYQPLFTAFGPKAIEHRLALSGARLIVTNVAN------ 148 +P E +L R GA++ +F F ++ R+ + LI++ A Sbjct: 117 LIYMPMVAEAAFAMLACARIGAIHSVVFGGFASTSLATRIDDATPVLIISADAGSRGCHV 176 Query: 149 ---RAKLDEI----AHCP-QVCTVRESSDPLRT---GDIDFRAAVDAQSDDFAPVMRSGS 197 + LDE H P V + P++T D+D+ D PV S Sbjct: 177 TPYKCLLDEAIALAEHKPAHVLMLDRGLAPMKTIEGRDVDYATLRRQHMDAVVPVAWLES 236 Query: 198 DL-MFMMSTSGTTGAAKGVPVPLSALQAFAVYMRQAVGLL----PQDKFWNMADPGWAYG 252 + +++ TSGTTG KGV L + +AV + ++ L+ P + F+ +D GW G Sbjct: 237 NAPSYILYTSGTTGKPKGV---LRDVGGYAVALATSMDLIFCGKPGETFFCTSDIGWVVG 293 Query: 253 LYYAIIGPLAIGQGITFNEAAFTVQGS---YELIRRLGITSLAGAPTAYRMMMAAGEEAA 309 Y I GPL G E + + ++ + +T ++ APTA R++ E Sbjct: 294 HSYIIYGPLLAGMTTILYEGLPIRPDASIWWSIVEKYKVTRMSSAPTAIRVLKKQPLELL 353 Query: 310 ASVK-GQLRAVSSAGEPLNAEVVRWFASALDVPIHDHYGQTELG--MVVNNHHALQHEVV 366 L+A+ AGEPL+ W + L VP+ D+Y QTE G ++ Sbjct: 354 QKHDLSSLKALYLAGEPLDQTTSDWISGVLGVPVIDNYWQTETGWPIISVAKGVGDKPTR 413 Query: 367 PGSAGFAMPGYRVVVLDDNLQELGANQPGELAIDIARSPL-------------FWFSGYW 413 GS G M GY+ V+++ E A P E + I PL + S YW Sbjct: 414 SGSPGQPMYGYKAKVINEETGEECA--PNEKGVVIIEGPLPPGCLQTLYGDDQRFVSTYW 471 Query: 414 KQETPAIAGGYYATGDNVELEKNGSISFIGRSDDVITSAGYRIGPFDVESALLEHPAVAD 473 + Y+T D + +G +GR+DDVI AG+R+G ++E ++ H V++ Sbjct: 472 RN----FKREAYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHANVSE 527 Query: 474 VAVIGLPDPERTEIVKAFVVLSDKFKASD-----ELAEQLAQHVKRRLSAHAYPRAIEFV 528 VAV+G+ +P + + AFV+L + A+D +L ++ + V +RL P + FV Sbjct: 528 VAVVGVENPIKGQCAVAFVILKNAAAAADPDEARKLEAEIMKVVDKRLGPIGRPSHVYFV 587 Query: 529 DALPKTPSGKLQR 541 ALPKT SGKL R Sbjct: 588 SALPKTRSGKLLR 600 >gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 135/561 (24%), Positives = 231/561 (41%), Gaps = 69/561 (12%) Query: 22 IEALREQFRGDFETGINACVECCDRHIQGDKIALDFVSIHGQHHPYSFAQIRSMASRVAN 81 +E L E F+ + NACV C D+ + ++ ++ +++ V Sbjct: 26 VELLDESFQKYADR--NACV-CMDKAL-------------------TYREVDHLSTEVGA 63 Query: 82 LLKQQGIQPGQIVAGMLPRTPELLATVLGTLRAGAVYQPLFTAFGPKAIEHRLALSGARL 141 L+ G+Q G VA M+P + + LRAG V + + P+ +EH+L SGA Sbjct: 64 WLQSIGLQKGARVALMMPNVLQYPIAIAAVLRAGYVIVNVNPLYKPRELEHQLTDSGAEA 123 Query: 142 IVTNVANRAKLDEIAHCPQV-----CTVRESSDPLRTGDIDF-----RAAVDA----QSD 187 I+ A L+++ QV T+ + L+ G ++F + V A Q+ Sbjct: 124 IIILENFAATLEKVIASTQVKHVIVATMGDLFGGLKGGIVNFVVRHVKKMVPAYSLPQAV 183 Query: 188 DFAPVMRSGS------------DLMFMMSTSGTTGAAKGVPVPLSALQAFAV----YMRQ 231 F V+R + DL F+ T GTTG AKG + + A + ++ Sbjct: 184 PFKEVLRQAAGMTLQRPALGHQDLAFLQYTGGTTGTAKGAMLTHRNIIANVLQNEAWISP 243 Query: 232 AVGLLPQDKFWNMADPGWAYGLY-YAIIGPLAIGQGIT--FNEAAFTVQGSYELIRRLGI 288 + LP+DK Y ++ G L G+ + G + + + + Sbjct: 244 VLNTLPKDKQLIFVCALPLYHIFALTTCGMLGTHLGVMNLLIPNPRDIPGFIKELMKYKV 303 Query: 289 TSLAGAPTAYRMMMAAGEEAAASVKGQLRAVSSAGEPLNAEVVRWFASALDVPIHDHYGQ 348 L T Y ++ + A +L+ + G + V + I + YG Sbjct: 304 HFLPAVNTLYNGLLNNPDFAKVDF-SELKLCNGGGMAVQKVVNDKWREVTGCAICEGYGL 362 Query: 349 TELGMVVNNHHALQHEVVPGSAGFAMPGYRVVVLDDNLQELGANQPGELAIDIARSPLFW 408 +E + +E G+ G + + ++D + E+ GE+AI R P Sbjct: 363 SETSPTATANPPTTNEFT-GTIGLPVSSTELKIIDSDDNEVPHGSAGEIAI---RGPQV- 417 Query: 409 FSGYWKQ--ET--PAIAGGYYATGDNVELEKNGSISFIGRSDDVITSAGYRIGPFDVESA 464 +GYW ET A G++ TGD +++ G + R D+I +G+ + P ++E Sbjct: 418 MAGYWNNPVETAQSMTADGFFKTGDIGIMDERGFTKIVDRKKDMILVSGFNVYPSEIEGV 477 Query: 465 LLEHPAVADVAVIGLPDPERTEIVKAFVVLSDKFKASDELAEQLAQHVKRRLSAHAYPRA 524 + HP V + A IG+PD E VK FVV D E L + + + + + P++ Sbjct: 478 VAAHPGVLECACIGVPDEHTGEAVKLFVVRRDPALTEAE----LMAYCREQFTGYKKPKS 533 Query: 525 IEFVDALPKTPSGKLQRFVLR 545 IEF LPK+ GK+ R LR Sbjct: 534 IEFRTELPKSNVGKILRRELR 554 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,329,221 Number of extensions: 57605 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 3 Length of query: 556 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 468 Effective length of database: 895,685 Effective search space: 419180580 Effective search space used: 419180580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)