BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2837.p (254 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 98 4e-22 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 95 5e-21 gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Jant... 84 9e-18 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 83 2e-17 gi|152983220|ref|YP_001352662.1| short-chain dehydrogenase/reduc... 81 7e-17 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 14/249 (5%) Query: 7 VYVVTGAASGLGAATAEQLIRAGAQVVLADVNPVAGEKMQATLGAHARFVLTDVTSEA-S 65 V +VTGA+ G+G A A++L + GA+V+ + + LG + V+ DV A S Sbjct: 10 VALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVNDAARS 69 Query: 66 AQEVFEVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFNMARLAA 125 + E+ G V LVN AGI ++L + DS + A N+ VG + A L Sbjct: 70 VALIDEIQKEFGAVSILVNNAGITQ-DQLAMRMKDEEWDSVI-ATNLTAVGRLSRAVLRG 127 Query: 126 QHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELARHGIRV 185 + + G IIN S+ G GQ+ YAA+K GV M+ +ARE+ I V Sbjct: 128 MM--------KAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITV 179 Query: 186 MTIAPGIIETPMMLGMSEEVRESLSRNVPFPPRLGKPSEFASLVMYIL--ENRYMNGEVI 243 IAPG I+T M +SE+ +L + VP RLG P + A+ V ++ + Y+ G + Sbjct: 180 NCIAPGFIDTDMTKTLSEQQIAALLQQVPL-GRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 244 RMDGALRMS 252 ++G + M+ Sbjct: 239 HVNGGMYMN 247 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 122/252 (48%), Gaps = 21/252 (8%) Query: 9 VVTGAASGLGAATAEQLIRAGAQVV--LADVNPVAGE--KMQATLGAHARFVLTDVTSEA 64 +VTG GLG A +L G QVV + N A E K+ G DV+ Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVSDYD 65 Query: 65 SAQE-VFEVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFNMARL 123 SAQ+ V ++ MGPV LVN AGI + K G D+ M NL FNM + Sbjct: 66 SAQQCVAQIEKEMGPVDVLVNNAGITR-DITFKKMGKPDWDAVMAT---NLDSVFNMTKP 121 Query: 124 AAQHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELARHGI 183 + E G IIN +S+ +G GQ Y+A+K G+ T +A E+AR + Sbjct: 122 VCDGM------VERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAV 175 Query: 184 RVMTIAPGIIETPMMLGMSEEVRESLSRNVPFPP--RLGKPSEFASLVMYILENR--YMN 239 V TI+PG I T M++ + ++V + ++ VP P RLGKP E A LV Y+ + ++ Sbjct: 176 TVNTISPGYIGTKMVMAIPQDVLD--TKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLT 233 Query: 240 GEVIRMDGALRM 251 G I ++G M Sbjct: 234 GANIAINGGQHM 245 >gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 249 Score = 84.0 bits (206), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 16/250 (6%) Query: 7 VYVVTGAASGLGAATAEQLIRAGAQVVLADV-NPVAGEKMQATL---GAHARFVLTDVTS 62 + +VTG + G+GA A G V ++ V N A + + A + G A V D+ Sbjct: 5 IMIVTGGSRGIGAEIATLAAADGYAVCISYVKNKAAADAVVAAIREAGGTAIAVAADMAV 64 Query: 63 EASAQEVF-EVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFNMA 121 EA +F V +G + LVN AGI + + + V R+ R N N+VG+F A Sbjct: 65 EADILRLFATVDKELGTLTALVNNAGILETQMRVDQMDVARM---QRIFNTNIVGTFVCA 121 Query: 122 RLAAQHISAGQADTEGERGVIINTASIAAFEGQMGQ-VAYAASKGGVVSMTLPMARELAR 180 R A + +S G G I+N +S+AA G G+ V YAASKG V +MT+ +A+E+A Sbjct: 122 REAVKRMSTKYG---GVGGAIVNISSVAARAGGPGEYVDYAASKGAVDTMTIGLAKEVAN 178 Query: 181 HGIRVMTIAPGIIETPMMLGMSEEVR-ESLSRNVPFPPRLGKPSEFASLVMYILENR--Y 237 GIRV + PG+I T + E R + + +VP R G+ E A +++L ++ Y Sbjct: 179 EGIRVNAVRPGVIYTEIHASGGEPGRVDRVKASVPM-QRGGEAREVAQAAIWLLSDQASY 237 Query: 238 MNGEVIRMDG 247 G + + G Sbjct: 238 TTGSFLDVTG 247 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 19/252 (7%) Query: 5 QGVYVVTGAASGLGAATAEQLIRAGAQVVLADVNPVA-GEKMQATLGA---HARFVLTDV 60 + V ++TGA+ G+GAA AE+L + G VV+ + + + A L A A V DV Sbjct: 6 KKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADV 65 Query: 61 TSEASAQEVF-EVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGSFN 119 + A + +F E +G V L+N AGI L + + F R +IN+ G+FN Sbjct: 66 ANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSD----ELFERTFSINVRGTFN 121 Query: 120 MARLAAQHISAGQADTEGERGVIINTASIAAFEGQMGQVAYAASKGGVVSMTLPMARELA 179 R AA ++ G G ++N +S Y SK V +T A+E+ Sbjct: 122 TLREAATRLNDG--------GRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMR 173 Query: 180 RHGIRVMTIAPGIIETPMMLGMSEEVRESLSRNVPFPPRLGKPSEFASLVMYIL--ENRY 237 I V +APG + T + E + N+P RLG+P + A+ V +++ + + Sbjct: 174 GRNITVNAVAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGW 233 Query: 238 MNGEVIRMDGAL 249 +NG+V+R +G L Sbjct: 234 INGQVLRANGGL 245 >gi|152983220|ref|YP_001352662.1| short-chain dehydrogenase/reductase SDR [Janthinobacterium sp. Marseille] Length = 236 Score = 80.9 bits (198), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 27/252 (10%) Query: 1 MAIKQGVYVVTGAASGLGAATAEQLIRAGAQVVLAD--VNPVAGEKMQATLGAHARFVLT 58 M Q V VVTGA+ G+GA + + ++V + P + + G Sbjct: 1 MNKSQKVVVVTGASQGIGAKIVQAFRKLDYRIVATSRSIGPSDDDNILNIAG-------- 52 Query: 59 DVTSEASAQEVF-EVAGAMGPVVGLVNCAGIAPGEKLLGKNGVHRLDSFMRALNINLVGS 117 D+ A+A+ V E G + LVN AGI G+ H ++ + +N+N+ G Sbjct: 53 DIGDPATARRVISEGVARFGRIDTLVNNAGIYIGKPFTE----HTVEDYAAVMNVNMAGF 108 Query: 118 FNMARLAAQHISAGQADTEGERGVIINTASI--AAFEGQMGQVAYAASKGGVVSMTLPMA 175 +++ +LA I+ + + G V+ TASI A G +A A +KGG+ + T +A Sbjct: 109 YHITQLA---IAEMEKHSSGH--VVSITASIDQVAISGVYSVLA-ALTKGGINAATKSLA 162 Query: 176 RELARHGIRVMTIAPGIIETPMMLGMSEEVRESLSRNVPFPPRLGKPSEFASLVMYILEN 235 E A+ GIRV +APG I+TPM E+ E L P RLG+ S+ A ++++ Sbjct: 163 IEYAKKGIRVNAVAPGNIKTPM---HPPEIHEVLGTFNPI-GRLGETSDIADAILFLESA 218 Query: 236 RYMNGEVIRMDG 247 ++ GE++ +DG Sbjct: 219 PFITGEILHVDG 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 538,236 Number of extensions: 21521 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 19 Length of query: 254 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 173 Effective length of database: 921,564 Effective search space: 159430572 Effective search space used: 159430572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)