BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2835.p (384 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 130 1e-31 gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 128 5e-31 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 92 4e-20 gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family p... 65 9e-12 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 174/387 (44%), Gaps = 55/387 (14%) Query: 40 EALKELAALGAMGMCVPEQWGGAGMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITE 99 EA K AA G G+ P +GG G+ + +E + + S ++ L G E Sbjct: 79 EAFKAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEML----NSASLSFALCPLLTDGAIE 134 Query: 100 KY---GSPAQKEQWLKPLARGEMLGCFCLTEPHTGSDAAAIRTRA--ERDGEYFILNGTK 154 GS QKE++L G+ G LTEP GSD A +R+RA + DG Y I +GTK Sbjct: 135 ALMTAGSDQQKEKFLPNFIAGKWTGTMNLTEPQAGSDLALVRSRAVPQGDGTYKI-SGTK 193 Query: 155 QFITSGKHAG----VAIVFAVT-DRSAGKKGISCFLVPRDTAGFVVGRS----------- 198 FIT G+H + +V A T D G KGIS FLVP+ F+V Sbjct: 194 IFITYGEHDMAENIIHLVLARTPDAPEGVKGISLFLVPK----FLVNEDGSLGERNDAFC 249 Query: 199 ---EEKMGQHASDTVQIILENCRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMAR 255 E K+G AS T + + L+G+E G + A R + Q + +A Sbjct: 250 VSIEHKLGIKASPTAVLQFGDHGGAIGTLIGQENRGLETMFIMMNAARFAVGIQGISVAE 309 Query: 256 AAFEAAVSYARQR--------ESFGVPIIDHQAVNFRLADMNTLLDAARLMVWRAAQLKD 307 A++ AV+YA+ R + V II V L M ++AAR + + A D Sbjct: 310 RAYQKAVAYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGASAFD 369 Query: 308 ----QGRPCLKEASMA---------KMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYR 354 G +++A A K +++E + +AS +QIHGG+G+ + + YR Sbjct: 370 IAHHHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVASTGLQIHGGMGFIEETGAAQYYR 429 Query: 355 DVRICQIYEGANDIQ-RLVIGRAIASD 380 D RI IYEG IQ ++GR D Sbjct: 430 DARILTIYEGTTAIQANDLVGRKTVRD 456 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 128 bits (322), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 113/371 (30%), Positives = 170/371 (45%), Gaps = 49/371 (13%) Query: 54 CVPEQWGGAGMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPAQKEQWLKP 113 C PE +GG G+ M L + E+ T+ + A +G+ QK +L Sbjct: 98 CDPE-YGGQGLP-MVLQNSFYEMLNSSNQAWTMYPGLSHGAYECLYAHGTEQQKALYLPK 155 Query: 114 LARGEMLGCFCLTEPHTGSDAAAIRTRAER--DGEYFILNGTKQFITSGKHAGVAIVFAV 171 L GE G CLTE G+D +R++AE DG Y I G+K FI++G+H A + + Sbjct: 156 LVSGEWTGTMCLTEAQCGTDLGLLRSKAEPQADGSYKI-TGSKIFISAGEHDMAANILHL 214 Query: 172 T-----DRSAGKKGISCFLVPR---DTAGFVVGRS-------EEKMGQHASDTVQIILEN 216 D G KGIS F+VP+ D AG + R+ EEKMG H + T Q+ N Sbjct: 215 VLARLPDAPEGTKGISLFIVPKFLPDAAGKLGARNPIFCGALEEKMGIHGNATCQM---N 271 Query: 217 CRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMARAAFEAAVSYARQR-------- 268 L+G+ G + A R+G+ QS+G+ A++ A+ YA+ R Sbjct: 272 IDGATGWLIGEPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALVYAKDRLQMRSLTG 331 Query: 269 ----ESFGVPIIDHQAVNFRLADMNTLLDAAR-LMVWRAAQL-KDQGRP-------CLKE 315 + PII H V L + R + A Q+ K+ P + E Sbjct: 332 PKATDKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDKELNHPDEAVRAEAVDE 391 Query: 316 ASM----AKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIYEGANDIQRL 371 ++ K F ++ S+A+Q++GG G+ S++ +E+ RD RI IYEG N IQ L Sbjct: 392 VALLTPIIKAFLTDNGWISTSEAMQVYGGHGFISEWGMEQYVRDSRINMIYEGTNTIQSL 451 Query: 372 -VIGRAIASDQ 381 ++GR I D Sbjct: 452 DLLGRKILLDN 462 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 92.4 bits (228), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 25/311 (8%) Query: 86 IVSVQNSLACGITEKYGSPAQKEQWLKPLARGEMLGCFCLTEPHTGSDAAAIRTRAER-- 143 ++ + +L + +K S E+ L + ML +TE GSD + T A Sbjct: 143 LLQQEPALFATLKDKLFSTGHDERDLPLPDKASMLVGMGMTEKQGGSDVRSNTTVARPLE 202 Query: 144 ---DGEYFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGISCFLVPR-----DTAGFVV 195 G+ + L G K F S +V A T+ G+SCF VPR ++ Sbjct: 203 SAGRGQPYALTGHKWFF-SAPMCDAHLVLARTE-----AGLSCFFVPRWRPDGSKNAILI 256 Query: 196 GRSEEKMGQHASDTVQIILENCRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMAR 255 R ++K+G ++ + ++ ++ ++G++G G + R+ S G+ R Sbjct: 257 QRLKDKLGNRSNSSSEVEFQDAY---GVMVGEDGRGIPTIIEMANHTRLDCVIGSTGLMR 313 Query: 256 AAFEAAVSYARQRESFGVPIIDHQAVNFRLADMNTLLDAARLMVWRAAQLKDQGRPCLKE 315 A A+ +AR R +FG+P+ + + LAD+ +AA ++ R AQ + ++ Sbjct: 314 NALVQAIHHARHRHAFGLPLAEQALMQNVLADLALESEAATRLMLRLAQAAEAIDDPVER 373 Query: 316 A------SMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIYEGANDIQ 369 A AK + + A + + +++ GG GY + P+ R+YR+ + I+EG+ ++ Sbjct: 374 AWRRVVTPAAKFWICKRALEFTGECMEVWGGNGYVENAPMARMYREAPVNSIWEGSGNVM 433 Query: 370 RLVIGRAIASD 380 L + RAIA + Sbjct: 434 CLDVLRAIAKE 444 >gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family protein [Janthinobacterium sp. Marseille] Length = 437 Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 75/361 (20%), Positives = 149/361 (41%), Gaps = 26/361 (7%) Query: 18 QFAQERLLPFAADWDKNHTFPAEALKELAALGAMGMCVPEQWGGAGMDYMSLVLALEEIA 77 +FAQE A+ D+ P LK++ G G+ VP++ GGAG+ Y++L + Sbjct: 34 EFAQE-----ASVRDRERRLPFAELKKITQSGLWGITVPKEHGGAGVSYVTLAQIFAIFS 88 Query: 78 AGDGATSTIVSVQNSLACGITEKYGSPAQKEQWLKPLARGEMLGCFCLTEPHTGSDAAAI 137 DG+ I + + ++G+ QK+ + + + G+ G + + + Sbjct: 89 RADGSIGQIPQ-NHYFVIELIREHGTEEQKKFFFERILAGDHFGNALVELNAKKPEDRKV 147 Query: 138 RTRAERDGEYFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGISCFLVPRDTAGFVVGR 197 A DG+ +++ +G I A+ + ++ F R G + Sbjct: 148 SLFA--DGDEHYRATVRKYYATGSLYADWIPTALNSEDKEEHHLAFF--SRHAEGLTIID 203 Query: 198 SEEKMGQHASDTVQIILENCRVPATALLGKEGDGYRIALSNLEAGRIGIAAQSVGMARAA 257 +GQ + + +IL+N R+ ++ ++ G+I AA G+ARAA Sbjct: 204 DWAGLGQRTTASGSVILDNARIAKNLVVSHREKKEHVSPVG-PTGQIMHAAIDTGIARAA 262 Query: 258 FEAAVSYARQRE------SFGVPIIDHQAVNFRLADMNTLLDAARLMVWRAAQLKDQG-- 309 FEA +++ R R + + Q + D++ L A ++ RA ++ D Sbjct: 263 FEATIAFIRGRNPKKPDAAPDASWEEDQLTIREIGDLSVALHGAEALLERAGRIIDHAYV 322 Query: 310 ---RPCLKEASMA----KMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIY 362 + +AS+A + ++ AA I + + G S ++R +RD R ++ Sbjct: 323 TGLQTDWTKASIAVSEVRAASTHAALLITNKLFEFSGTQATASKHNLDRYWRDARTHTLH 382 Query: 363 E 363 + Sbjct: 383 D 383 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 843,639 Number of extensions: 33478 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 4 Length of query: 384 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 299 Effective length of database: 906,776 Effective search space: 271126024 Effective search space used: 271126024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)