BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2829.p (504 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 172 4e-44 gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 93 3e-20 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 86 5e-18 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 62 8e-11 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 152/517 (29%), Positives = 240/517 (46%), Gaps = 64/517 (12%) Query: 9 EQLKELASSLHIQLT--TEQASQYLD-LMQASFDAYDVIDGLPDEIPAIKYPRSAGARPA 65 + LKEL++ LH + TE A +LD + Q+ +A+ +D PA+ Sbjct: 4 KTLKELSALLHSKQISATELAQLFLDRIAQSDLNAFLHVD------PAL----------- 46 Query: 66 AKDNPLNAWACKSTVKGAAAGKLAGRTVVLKDNVALAGVPMMN-------------GSST 112 T+K AA LA + + D L G+P+ + GS Sbjct: 47 -------------TLKEAA---LADQRLASGDTTVLTGIPIAHKDIFVTRDWRSTAGSKM 90 Query: 113 LEGFVPSYDASVVTRLLDAGATILGKATCEHFCLSGGSHTSDPAPVHNPRRQGYASGGSS 172 LE +V +DA+VV + AG LGK C+ F + + S V NP + GGSS Sbjct: 91 LENYVSPFDATVVEQFKQAGMVHLGKLNCDEFAMGSSNENSYFGAVKNPWDKAAIPGGSS 150 Query: 173 SGSAALVAAGEADMAIGGDQGGSIRIPSAFCGTYGMKATHGLVPYTGVMPIEATVDHVGP 232 GSAA +AA + D GGSIR P+A CG G+K T+G V G++ +++D GP Sbjct: 151 GGSAAAIAARLTPASTATDTGGSIRQPAALCGVTGIKPTYGSVSRFGMIAFASSLDQGGP 210 Query: 233 ITANVRDNALMLEVIAGADGLDPRQYAPQVQPYTAALDRGVRGLKIGILTEGFALGNMDK 292 I D L+L + G D D + +T L++ ++GLKIG+ E F G + Sbjct: 211 IAKTAEDCGLLLNAMTGFDPRDSTSIERDKEDFTRDLNQPLQGLKIGLPREYFGAG-LAA 269 Query: 293 RVADKVQEAIAQLEKLGASVATVSVEEHVLAGALWQPIGCEGLTMQMMHGNGMGFNWKGL 352 V V+ A+ + EKLGA++ +S+ + L+ + I + + +G+ + ++ Sbjct: 270 DVEQAVRAALKEYEKLGATLVDISLPKTELSIPTYYVIAPAEASSNLSRFDGVRYGYRAK 329 Query: 353 YDLGLLDRHAHWRDHADDLSATLKLCMFVGQYGLTR-YQGRFYAKAQNIARRARAGYDKA 411 L D + R A+ +K + VG Y L+ Y +Y +AQ I R + +A Sbjct: 330 DYTDLSDMYRKTR--AEGFGEEVKRRILVGAYVLSHGYYDAYYLQAQKIRRLIAQDFQQA 387 Query: 412 LADFDLLVMPTVPIIAQPL-PAAGCPLSDYVARAFEMIGNTAPLDITGHPAMSIPCGTVE 470 D+++ P P +A L A P+++Y+A F T + G P MSIPCG + Sbjct: 388 FTQCDVIMGPVCPTVAWDLGDKADDPIANYLADIF-----TLSTSLAGLPGMSIPCGFGQ 442 Query: 471 G-----LPVGLMLVGKHYAEATLYQAAAAFEASMDWQ 502 G PVGL ++G ++AEA L A ++ + DW Sbjct: 443 GEKNSKRPVGLQIIGNYFAEAKLLNVAHQYQQATDWH 479 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 53/416 (12%) Query: 87 KLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYD--ASVVTRLLDAGATILGKATCEHF 144 KL G +KD +AG G+ P+ + A+ V RLL GA +GK + Sbjct: 41 KLEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDEL 100 Query: 145 CLSGGSHTSDPAPVHNPRRQGYASGGSSSGSAALVAAGEADMAIGGDQGGSIRIPSAFCG 204 S + NP GGSSSGS A VAAG AD+A+G D GGS+R+P+++CG Sbjct: 101 TYSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCG 160 Query: 205 TYGMKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAGADGLDPRQYAPQVQP 264 +GM+ THG + G + + + D VG + +A A + Sbjct: 161 VWGMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEHLEQTFCALAHA------ETTSMPAT 214 Query: 265 YTAALDRGVRGLKIGILTEGFALGNMDKRVADKVQEAIAQLEKLGASVATVSVEEHVLAG 324 + D G+ GL + + F+ ++ V + +L A+ + E + Sbjct: 215 FLTLNDSGINGLLDPAVFDAFSKLKNEQSDFLAVDSEL-ELASWAAAFRILQASEAWMEH 273 Query: 325 ALWQPIGCEGLTMQMMHGNGMGFNWKGLYDLGLLDRHAHWRDHADDLSATLKLCMFVGQY 384 LW HAD+L ++ F Sbjct: 274 GLWV------------------------------------TQHADELGVDIRQ-RFNIAA 296 Query: 385 GLTRYQGRFYAKAQNIARRARAGYDKAL-ADFDLLVMPTVPIIAQPLPAAGCPLSDYVAR 443 G+T Q R AQ + A ++ L + ++V+PTVP A L A + D R Sbjct: 297 GVTATQVR---TAQEVRIAAIRELNRILDSQHKVIVLPTVPTPAPLLTADSATVDDVRMR 353 Query: 444 AFEMIGNTAPLDITGHPAMSIPCGTVEGLPVGLMLVGKHYAEATLYQAAAAFEASM 499 + ++ + G P +S+P V G PVGL ++G + + AA +A + Sbjct: 354 SQHLLCIAG---LAGLPQLSMPWIQVNGAPVGLSIIGGRGCDEIVLHAAHKLQARI 406 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 118/420 (28%), Positives = 180/420 (42%), Gaps = 64/420 (15%) Query: 86 GKLAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATILGKATCEHFC 145 G L G + +KD + A +P GS E + P DA+ V AGA ++GK F Sbjct: 66 GLLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLVDAACVAASRSAGAVLMGKTVTTEFA 125 Query: 146 LSGGSHTSDPAPVHNPR-RQGYASGGSSSGSAALVAAGEADMAIGGDQGGSIRIPSAFCG 204 T P P NP + GGSSSGSAA VA+G A GSI P+A+CG Sbjct: 126 ------TFQPGPTRNPHGATDHTPGGSSSGSAAAVASGMVPAAFATQTAGSIVRPAAYCG 179 Query: 205 TYGMKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAGADGLDP--RQYAPQV 262 G K T G +P G+ + ++D VG +T NV D A + GA P Q AP+ Sbjct: 180 VVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNVADAAFFI----GALARLPLSSQLAPEA 235 Query: 263 QPYTAALDRGVRGLKIGIL-TEGFALGNMDKRVADKVQEAIAQLEKLGASVATVSVEEHV 321 P L++GI T + ++ R D +++A+ LE+ GA + + + Sbjct: 236 APR----------LRVGICRTPNWERASVATR--DAIEQAVRLLERSGAVLRDIDL---- 279 Query: 322 LAGALWQPIGCEGLTMQMMHGNGMGFNWKGLYDLGLLDRHAHWRDHADDLSATLKLCMFV 381 P C GLT + M + ++ R HA+ S + Sbjct: 280 -------PAPCGGLTDAQIR--IMSYEASAAFE-------PEARSHAEGFSKAFAAVLEA 323 Query: 382 GQYGLTRYQGRFYAKAQNIARRARAGYDKALADFDLLVMPTVPIIAQP-LPAAGCPLSDY 440 G+ G+ G Y AQ +A +R D+L+ P+ A L A G P+ + Sbjct: 324 GR-GI---DGTSYVAAQALAAASRQMVAGVFETVDILLAPSTEGEAPAGLDATGDPIFN- 378 Query: 441 VARAFEMIGNTAPLDITGHPAMSIPCGTVE-GLPVGLMLVGKHYAEATLYQAAAAFEASM 499 R + ++GN P + +P G G+P+G+ L+G + +A+ AA E++ Sbjct: 379 --RMWSLLGN---------PCVHVPLGAGPGGMPIGVTLIGPRWGDASTLAAANLLESTF 427 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Query: 88 LAGRTVVLKDNVALAGVPMMNGSSTLEGFVPSYDASVVTRLLDAGATILGKATCEHFCLS 147 L G KDN+ +AG+ ++ A+VV RLLDAGA ++GK + F Sbjct: 68 LYGVPFAAKDNIDVAGIRTTAACPEF-AYIAEQHATVVQRLLDAGAIVIGKTNLDQFATG 126 Query: 148 GGSHTSDPAPVHNPRRQGYASGGSSSGSAALVAAGEADMAIGGDQGGSIRIPSAFCGTYG 207 S V N Y SGGSSSGSA++VA G ++G D GS R+P+ G Sbjct: 127 LVGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPAGLNNIVG 186 Query: 208 MKATHGLVPYTGVMPIEATVDHVGPITANVRDNALMLEVIAGADGLD 254 +K T G + GV+P T+D V V D L+ AG D D Sbjct: 187 LKPTVGSLSGRGVVPACRTLDCVSIFATTVADAELVFTQAAGFDAAD 233 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,143,526 Number of extensions: 47571 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 4 Length of query: 504 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 417 Effective length of database: 899,382 Effective search space: 375042294 Effective search space used: 375042294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)