BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2812.p
         (456 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janth...   301   7e-83

>gi|152979846|ref|YP_001352995.1| replicative DNA helicase
           [Janthinobacterium sp. Marseille]
          Length = 461

 Score =  301 bits (770), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 181/447 (40%), Positives = 271/447 (60%), Gaps = 17/447 (3%)

Query: 5   VQATPYAHEAEQSVLGALLLDNGAADRIGDL-KAKHFYRADHQAIFAEAISLISKGEPAD 63
           ++  P++ EAEQSVLG LLLDN A DRI D      FYR DH+ IF   + LI+   PAD
Sbjct: 12  LRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVNHDDFYRYDHRIIFQHIVKLINNARPAD 71

Query: 64  VISIWERLQARGDVFDGELLPYIHRIAQNTPSSENVHHYASIVVEKALLRGLLHVTGQVE 123
           VI+++E L   G   +   + Y++ +AQNTPS+ N+  YA IV ++ +LR L+ V+ ++ 
Sbjct: 72  VITVFEALTNSGKAEEVGGVAYLNALAQNTPSAANIRRYAEIVRDRGVLRKLITVSDEIS 131

Query: 124 ELVRNPRGQSADQILEKVVGMVNSLAARRVR-----QEPTLLNELLVTLIEQVAERSEVG 178
               NP+G+   Q+L++    + ++A    R     QE   L   +V  I+++  R    
Sbjct: 132 GNAFNPQGKEVKQMLDEAESKIFAIAEEGARGAQGFQEIQPLLTQVVERIDELYNRDSTS 191

Query: 179 D-NAMPTGIASLDAQLNGGVRRGQLVIFAGRPSMGKTALAVDVGLNIAERHS--ALLFSM 235
           D   +PTG A LD ++  G++ G L+I AGRPSMGKTA ++++G  +A        +FSM
Sbjct: 192 DITGVPTGFADLD-RMTSGLQPGDLIIVAGRPSMGKTAFSINIGETVAIESGLPVAVFSM 250

Query: 236 EMSSQEIAARALANRGGLSLSRI-LGRIDDADAQAWGAVTHGCSRLNQLRFAIDDTAAIS 294
           EM   ++A R L + G L   R+  GR+ D D   W  +TH   ++N  +  ID+T A++
Sbjct: 251 EMGGAQLAMRMLGSVGRLDQHRLRTGRLADED---WPRLTHAIQKMNDAQLYIDETPALN 307

Query: 295 LLELRLRAKAWKRRHG-LDLIVVDYLGLMTGGE-GEKRHEQIGSYSRGLKALAKELDVTV 352
            +ELR R++   R+ G L LI++DYL LM+    GE R  +I   SR LK LAKEL+  V
Sbjct: 308 SIELRARSRRLSRQCGKLGLIIIDYLQLMSANSAGENRATEISEISRSLKGLAKELNCPV 367

Query: 353 LALAQLNRKSEDRADRRPQLSDLRDSGEIEQDADVVVLIHRPEMHDPTNEALRGFAEALV 412
           +AL+QLNR  E R ++RP +SDLR+SG IEQDADV++ I+R E+++P +   +G AE ++
Sbjct: 368 IALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNP-DSPDKGTAEIII 426

Query: 413 RKQRNGALGDIPLKFKGATSRFEEWAG 439
            KQRNG +G + L F G  ++FE + G
Sbjct: 427 GKQRNGPIGAVRLTFLGQYTKFENYTG 453


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,036,443
Number of extensions: 42684
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 370
Effective length of database: 903,079
Effective search space: 334139230
Effective search space used: 334139230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)