BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2808.p (262 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982386|ref|YP_001352240.1| short chain dehydrogenase/reduc... 375 e-105 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 97 1e-21 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 96 2e-21 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 73 2e-14 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 73 2e-14 >gi|152982386|ref|YP_001352240.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 259 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/262 (72%), Positives = 216/262 (82%), Gaps = 3/262 (1%) Query: 1 MDLGIKGKTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGA 60 MDLGI+GK+ALVC +S+GLGR CA +LA EGV+VT++AR E L+A+AT IR A + + Sbjct: 1 MDLGIRGKSALVCGASRGLGRGCAEALAAEGVNVTLVARNLEVLQASATEIR---AVSDS 57 Query: 61 SVRTVVCDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPI 120 + V CDITT EGR ALA CP PDILVTNA GP GDFR+W+RDDWIAA+DANMLTPI Sbjct: 58 MITIVACDITTAEGREQALAVCPQPDILVTNASGPPTGDFRDWSRDDWIAALDANMLTPI 117 Query: 121 ELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSNGARSGLTGFVAGLARKTVAHNVT 180 ELIKATVDGM+ARGFGRI+NITSSAV+APID LGLSNGARSGLTGFVAGLARKTVA NVT Sbjct: 118 ELIKATVDGMMARGFGRIINITSSAVKAPIDSLGLSNGARSGLTGFVAGLARKTVARNVT 177 Query: 181 INNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYLCS 240 INNLLPGPFETDRL + + AA+ SGRTV+EV A RR NPA RFG EFG CA+LCS Sbjct: 178 INNLLPGPFETDRLAAIFSAAAEASGRTVEEVSAVRRAANPAKRFGTRQEFGATCAFLCS 237 Query: 241 AQAGFITGQNLLMDGGAYPGTF 262 AG+I GQN+L+DGG YPGTF Sbjct: 238 EHAGYINGQNILLDGGGYPGTF 259 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 23/258 (8%) Query: 8 KTALVCASSKGLGRACALSLAREGVHV-TMLARGAEALEAAATAIRQEVAATGASVRTVV 66 + ALV GLG A + LA G V T + G + + +++ +G Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKE----SGYDFHAYP 58 Query: 67 CDITTPEGRALALAACPAP----DILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPIEL 122 CD++ + +A D+LV NAG + F++ + DW A + N+ + + Sbjct: 59 CDVSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNM 118 Query: 123 IKATVDGMIARGFGRIVNITSSAVRAPIDILGLSN--GARSGLTGFVAGLARKTVAHNVT 180 K DGM+ RG+GRI+NI+S V G +N A++G+ GF LA + VT Sbjct: 119 TKPVCDGMVERGWGRIINISS--VNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVT 176 Query: 181 INNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYLCS 240 +N + PG T + + + V ++ P GR G P E AYL S Sbjct: 177 VNTISPGYIGTKMVMAIPQDVLDT--KIVPQI--------PMGRLGKPEEIAGLVAYLAS 226 Query: 241 AQAGFITGQNLLMDGGAY 258 +A F+TG N+ ++GG + Sbjct: 227 DEAAFLTGANIAINGGQH 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 28/261 (10%) Query: 5 IKGKTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGASVRT 64 + G+ ALV +S+G+GRA A LA+ G V G E+ A AI + + G + Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVI----GTATSESGAAAISEYLGNGG---KG 58 Query: 65 VVCDITTPEGRALAL-----AACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTP 119 VV D+ R++AL A ILV NAG + ++W + + N+ Sbjct: 59 VVLDVNDA-ARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAV 117 Query: 120 IELIKATVDGMIARGFGRIVNITSSAVRAPIDILGLSN--GARSGLTGFVAGLARKTVAH 177 L +A + GM+ GRI+NITS V G N A++G+ G LAR+ + Sbjct: 118 GRLSRAVLRGMMKAKTGRIINITS--VVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSR 175 Query: 178 NVTINNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAY 237 N+T+N + PG +TD T T + QQ + +V P GR G P + A ++ Sbjct: 176 NITVNCIAPGFIDTDM---TKTLSEQQIAALLQQV--------PLGRLGVPEDIAAAVSF 224 Query: 238 LCSAQAGFITGQNLLMDGGAY 258 L S QA +ITG L ++GG Y Sbjct: 225 LASPQASYITGTTLHVNGGMY 245 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 107/259 (41%), Gaps = 16/259 (6%) Query: 8 KTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGASVRTVVC 67 K A+V G+G+ A L + G +V + R A L+ AT E+ +G VR Sbjct: 7 KVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVAT----EIDPSGDHVRFHAG 62 Query: 68 DITTPEGRA----LALAACPAPDILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPIELI 123 DI P LA A DIL+ NAG +P F E ++ +D + + Sbjct: 63 DIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKGKFFMA 122 Query: 124 KATVDGMIARGFGRIVNITSSAVRAPIDIL--GLSNGARSGLTGFVAGLARKTVAHNVTI 181 +A M RG G IV S I + A +G+ LA + A N+ I Sbjct: 123 QAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNIRI 182 Query: 182 NNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRKLNPAGRFGDPAEFGDACAYLCSA 241 N + PG ET + T V L +P GR G PA+ +A +L SA Sbjct: 183 NTVAPGVVETPVYNTFMTD------DQVKATLPAFNAFHPLGRNGQPADVAEAILFLASA 236 Query: 242 QAGFITGQNLLMDGGAYPG 260 A +ITG L +DGG G Sbjct: 237 NASWITGTVLSVDGGVMAG 255 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 24/258 (9%) Query: 5 IKGKTALVCASSKGLGRACALSLAREGVHVTMLARGAEALEAAATAIRQEVAATGASVRT 64 + GK A V S+G+G A LAR+G V + A A+ QE+ A G Sbjct: 7 LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSAD---KAKAVAQEIEAAGGRALA 63 Query: 65 VVCDITTPEGRALALAACPAP----DILVTNAGGPKPGDFREWTRDDWIAAVDANMLTPI 120 + D + A+ A DILV NAG ++ +D+ V N+ + Sbjct: 64 IHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSVF 123 Query: 121 ELIKATVDGMIARGFGRIVNI-TSSAVRAPIDILGLSNGARSGLTGFVAGLARKTVAHNV 179 + M G GRI+ I +++A R P + +++ + G GLAR + Sbjct: 124 VATQEAARHM-GEG-GRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGI 181 Query: 180 TINNLLPGPFETDRLRSTATGAAQQSGRTVDEVLADRRK-LNPAGRFGDPAEFGDACAYL 238 T+NN+ PGP +TD + AD K L GR+G E AYL Sbjct: 182 TVNNVQPGPVDTDM-------------NPANSDFADTLKGLMAIGRYGKDEEIASFVAYL 228 Query: 239 CSAQAGFITGQNLLMDGG 256 +AG+ITG +L +DGG Sbjct: 229 AGPEAGYITGASLTIDGG 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 625,658 Number of extensions: 25841 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 17 Length of query: 262 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 181 Effective length of database: 921,564 Effective search space: 166803084 Effective search space used: 166803084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)