BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2806.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 182 2e-47 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 88 5e-19 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 88 5e-19 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 82 6e-17 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 80 1e-16 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 170/303 (56%), Gaps = 1/303 (0%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLT 60 M FDL DLRL + IA+ SL+++A ++L+A SNR++ E R G L R ++G+ LT Sbjct: 1 MHFDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG +L A+ + + E+LK ++ + +R+ T A + F+P LG FLA +P Sbjct: 61 PAGRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILNFSTDRLVLATALEHPLAGT 180 ++++ L E + D+L +Q G ++G++ G + + L F D+LVL H LA Sbjct: 121 EIDLQLVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHALAER 180 Query: 181 GSIAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIETNVGIG 240 S+ D L + + L + F+ + ++ + L++R++ SF A+ +++ GI Sbjct: 181 PSVQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVAEQAGIA 240 Query: 241 IVPRSAALRHQQTMQLAVVELSDPWSVRERSMVVQNMETLSPHARNLVEFIREQTAQPSD 300 ++P +AALRH + + + +V L D W+ RE + ++ +TLS HAR LV+++ QP Sbjct: 241 MLPEAAALRHIRELPVHMVALEDAWATRELRICIRAWDTLSTHARQLVDYLVAND-QPHT 299 Query: 301 DDK 303 D + Sbjct: 300 DAR 302 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 3/298 (1%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLT 60 M L LR F+ +AE T +AE + +S ++ S +++LE LG RL R ++ ++LT Sbjct: 1 MNITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 AGH LL AQ + + + + + KG + I A + +P++L F R+P Sbjct: 61 DAGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILN-FSTDRLVLATALEHPLAG 179 + V +E+ + I GT D+GI + GD + D+ + EH L Sbjct: 121 GIRVIVEDVAERQVRELIVAGTVDVGI-GMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMR 179 Query: 180 TGSIAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIETNVGI 239 +I + D + I L S + +L++ ++ G L +V M M+ VG+ Sbjct: 180 KKTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGV 239 Query: 240 GIVPRSAALRHQQTMQLAVVELSDPWSVRERSMVVQNMETLSPHARNLVEFIREQTAQ 297 IV + L + M L + +S P RE +++ + LSP A++L + E+ Q Sbjct: 240 AIV-TTGVLPVAERMGLELRTISAPVIERELAVLTRAGYPLSPAAQSLRTHLLEELPQ 296 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 131/281 (46%), Gaps = 27/281 (9%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLTPA 62 DL LR F+++AE LT++A+R+ + S +I+ LE LG L R +G++LT + Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRI-FANTTAVTEFMPEILGKFLARHPQ 121 G LL A+L ++QV +++ + G G + + F + A+ F+P ++ F + P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 122 VNVALEERLNHDILRGIQEGTADIGIVAGPV-QGDGLQILNFSTDRLVLATALEH----- 175 V +A+EE ++++ ++ D+ + P+ GL++ + +++A + H Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 176 ----PLAGTGSIAFLDTLEYEHIGLHE----GSTLHHFLNRIVSEHGQRLKLRIQVRSFE 227 PL F+ GL++ F R+V E + L Sbjct: 184 RKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNL---------- 233 Query: 228 AMCRMIETNVGIGIVPRSAALRHQQTMQLAVVELSDPWSVR 268 + ++ +G+ IVP A++RH Q ++ ++L +R Sbjct: 234 STLSLVAAGLGVSIVP--ASMRHVQLKEVVYLKLEQAPDLR 272 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 81.6 bits (200), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 3/174 (1%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLT 60 M +L LR F+ +AE R+A R++++ S I+ LEA LG +L R S+ V LT Sbjct: 1 MNIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL AQ +QQ L M++ +G G + + +TA +P L +F +P Sbjct: 61 PAGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYP 120 Query: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGDG---LQILNFSTDRLVLAT 171 QV + L E L + +G D+G++ P+ L L ++ L+LA Sbjct: 121 QVEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAV 174 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 137/310 (44%), Gaps = 7/310 (2%) Query: 5 LTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARLGTRLLYRESKGVQLTPAGH 64 L L++F +A S +R+AE ++L+ A S ++K+LE G L + K + LTP G Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 65 TLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQVNV 124 LLH+++ +QQ + + M Q+ GI G A +A F P +L +F H V + Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQF-KGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTL 124 Query: 125 ALEERLNHDILRGIQEGTADIGIVAGPVQGDGLQILN--FSTDRLVLATALEHPLAGTGS 182 L +L + DI I+ P + +N F+ V+ A +HPL + Sbjct: 125 NLSVHNREGLLNQMTSNLTDIAIMVRP--PTDMDTINEAFAPHPYVIVAAPDHPLVSQKN 182 Query: 183 IAFLDTLEYEHIGLHEGSTLHHFLNRIVSEHGQRLKLRIQVRSFEAMCRMIETNVGIGIV 242 I ++ + +GS H + + + + +++RS E + + + +G+ + Sbjct: 183 IPMSRLMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRSTETIKQAVIAGMGVSFL 242 Query: 243 PRSAALRHQQTMQLAVVELSDPWSVRERSMVVQNMETLSPHARNLVEFIREQTAQPSDDD 302 Q LAV+++ + +V + + L P A+ F+ ++ P + Sbjct: 243 SAHTISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKRLPPVAQAFKNFLLDEG--PELIE 300 Query: 303 KALLLNAKTG 312 + + N K G Sbjct: 301 RLIRYNPKPG 310 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 657,089 Number of extensions: 26282 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 33 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)