BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2804.p (388 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 89 3e-19 gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 75 6e-15 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 55 6e-09 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 164/389 (42%), Gaps = 64/389 (16%) Query: 26 PEYWR--KIDEARGYPEQFVDALTKAGWLAALIPQEYGGSGLGLTEASVIMEEINRTGGN 83 P W+ K+ G+ E F A AGW P ++GG GL A+ ME +N + Sbjct: 63 PSEWKDGKVTTTPGFKEAF-KAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEMLNSASLS 121 Query: 84 SGACHGQMYNMGT---LLRHGSPQQKQHYLPRIASGELRLQSMGVTEPTTGTDTTRIKTV 140 C + G L+ GS QQK+ +LP +G+ +M +TEP G+D +++ Sbjct: 122 FALC--PLLTDGAIEALMTAGSDQQKEKFLPNFIAGKWT-GTMNLTEPQAGSDLALVRSR 178 Query: 141 ALRRGD-RYVVNGQKVWISRVQH----SDLMILLARTTPLDQVKKKSEGMSIFIV----- 190 A+ +GD Y ++G K++I+ +H + + ++LART + +G+S+F+V Sbjct: 179 AVPQGDGTYKISGTKIFITYGEHDMAENIIHLVLARTP---DAPEGVKGISLFLVPKFLV 235 Query: 191 DLKQAIGR-------------GLEVRPIANMVNHETNELFFDHLEIPAENLIGEEGQGFR 237 + ++G G++ P A + F DH LIG+E +G Sbjct: 236 NEDGSLGERNDAFCVSIEHKLGIKASPTAVL-------QFGDHGGAIG-TLIGQENRGLE 287 Query: 238 YILDGLNAERTLIAAECIGDGYWFIDKAAQYAKHRVVFDRPIGMNQGVQF--------PI 289 + +NA R + + I KA YAK RV G V + Sbjct: 288 TMFIMMNAARFAVGIQGISVAERAYQKAVAYAKDRVQSKDLEGSATAVSIIHQPDVRRML 347 Query: 290 AEAYIELEAANLMRYRACALFDAGQACG------AQANMAKYL-------AAKASWEAAN 336 ++EAA + Y + FD G AQ ++L + + S + A+ Sbjct: 348 MSMRAQIEAARALAYVGASAFDIAHHHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVAS 407 Query: 337 VCLQTHGGFGFACEYDVERKFRETRLYQV 365 LQ HGG GF E + +R+ R+ + Sbjct: 408 TGLQIHGGMGFIEETGAAQYYRDARILTI 436 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 75.1 bits (183), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 157/368 (42%), Gaps = 54/368 (14%) Query: 40 EQFVDALTKAGWLAALIPQEYGGSGLGLTEASVIMEEINRTGGN----SGACHGQMYNMG 95 EQ+V AGW + EYGG GL + + E +N + G HG Sbjct: 86 EQYV----AAGWPSLTCDPEYGGQGLPMVLQNSFYEMLNSSNQAWTMYPGLSHGAYE--- 138 Query: 96 TLLRHGSPQQKQHYLPRIASGELRLQSMGVTEPTTGTDTTRIKTVALRRGD-RYVVNGQK 154 L HG+ QQK YLP++ SGE +M +TE GTD +++ A + D Y + G K Sbjct: 139 CLYAHGTEQQKALYLPKLVSGEWT-GTMCLTEAQCGTDLGLLRSKAEPQADGSYKITGSK 197 Query: 155 VWISRVQH----SDLMILLARTTPLDQVKKKSEGMSIFIVD--LKQAIGRGLEVRPIANM 208 ++IS +H + L ++LAR L + ++G+S+FIV L A G+ PI Sbjct: 198 IFISAGEHDMAANILHLVLAR---LPDAPEGTKGISLFIVPKFLPDAAGKLGARNPIFCG 254 Query: 209 VNHET-----NELFFDHLEIPAENLIGEEGQGFRYILDGLNAERTLIAAECIGDGYWFID 263 E N +++ LIGE +G + +NA R + + +G Sbjct: 255 ALEEKMGIHGNATCQMNIDGATGWLIGEPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQ 314 Query: 264 KAAQYAKHRV---------VFDR---PIGMNQGVQ--FPIAEAYIELEAANLMRYRAC-- 307 A YAK R+ D+ PI ++ V+ A+AY E A Y A Sbjct: 315 NALVYAKDRLQMRSLTGPKATDKPADPIIVHPDVRRMLLTAKAYAEGGRA-FSSYVALQI 373 Query: 308 --ALFDAGQACGAQA--------NMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKF 357 L +A A+A + K W + + +Q +GG GF E+ +E+ Sbjct: 374 DKELNHPDEAVRAEAVDEVALLTPIIKAFLTDNGWISTSEAMQVYGGHGFISEWGMEQYV 433 Query: 358 RETRLYQV 365 R++R+ + Sbjct: 434 RDSRINMI 441 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 55.1 bits (131), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 37/274 (13%) Query: 120 LQSMGVTEPTTGTDTTRIKTVALR-----RGDRYVVNGQKVWISRVQHSDLMILLARTTP 174 L MG+TE G+D TVA RG Y + G K W D ++LART Sbjct: 177 LVGMGMTEKQGGSDVRSNTTVARPLESAGRGQPYALTGHK-WFFSAPMCDAHLVLARTEA 235 Query: 175 ------LDQVKKKSEGMSIFIVDLKQAIGRGLEVRPIANMVNHETNELFFDHLEIPAENL 228 + + + +I I LK +G N N + F D + + Sbjct: 236 GLSCFFVPRWRPDGSKNAILIQRLKDKLG---------NRSNSSSEVEFQDAYGV----M 282 Query: 229 IGEEGQGFRYILDGLNAERTLIAAECIGDGYWFIDKAAQYAKHRVVFDRPIGMNQGVQFP 288 +GE+G+G I++ N R G + +A +A+HR F P+ +Q Sbjct: 283 VGEDGRGIPTIIEMANHTRLDCVIGSTGLMRNALVQAIHHARHRHAFGLPLAEQALMQNV 342 Query: 289 IAEAYIELEAANLMRYRACALFDAGQACGAQAN---------MAKYLAAKASWEAANVCL 339 +A+ +E EAA + R L A +A AK+ K + E C+ Sbjct: 343 LADLALESEAATRLMLR---LAQAAEAIDDPVERAWRRVVTPAAKFWICKRALEFTGECM 399 Query: 340 QTHGGFGFACEYDVERKFRETRLYQVAPISTNLI 373 + GG G+ + R +RE + + S N++ Sbjct: 400 EVWGGNGYVENAPMARMYREAPVNSIWEGSGNVM 433 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 918,629 Number of extensions: 37793 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 3 Length of query: 388 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 303 Effective length of database: 906,776 Effective search space: 274753128 Effective search space used: 274753128 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)