BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2803.p (396 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [... 157 1e-39 gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [... 154 7e-39 gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [... 147 7e-37 gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthin... 145 6e-36 gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [... 145 6e-36 >gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [Janthinobacterium sp. Marseille] Length = 378 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/352 (31%), Positives = 171/352 (48%), Gaps = 18/352 (5%) Query: 4 ATGPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARVDGLSSHFV 63 A+GPLAGI V+ L IA PFC+R LA+ GA VIKIE P GD R + DG S + Sbjct: 6 ASGPLAGIKVLELGTLIAGPFCSRMLAEFGAEVIKIESPDGGDPIRQWRVLKDGTSLWWS 65 Query: 64 WTNRSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIV 123 R+K+SLTLNLKD G++I QL +AD++++N PG L + L +P I+ Sbjct: 66 VQARNKKSLTLNLKDARGQKIARQLALEADIIIENYRPGVLEKWSLGYEQLKAENPATIM 125 Query: 124 CDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVA-KAGCSIADIAAGMYAYSNIL 182 +SG+G+ GP +D+ + + +S G V+G D + G SI D A ++ + Sbjct: 126 VRLSGFGQTGPLKDQPGFGAIGESMGGLRYVSGFPDRPPLRVGISIGDSVAALHGVIGAM 185 Query: 183 AALIQR----GR----------DGRGSHIDLSMLEALAEWM-SFPLYYAYQGASAPQRSG 227 AL R GR G+G ID+++ EA+ M S Y Y G +R+G Sbjct: 186 MALRHRDATGGRWNGKSGDASQAGQGQMIDVALYEAVFNMMESLVPEYDYAGV-VRERTG 244 Query: 228 AEHATIYPYGPFTAGDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFSSNALRHEHRE 287 I P +T GDG+ +++ + +K + D LA+DA+ + N R Sbjct: 245 GALPGIVPSNTYTTGDGENIVIAGNGDAIFKRLMLAMGRD-DLANDAQLARNDGRVPRTA 303 Query: 288 TLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWTE 339 + I T + L A + ++ ++ D+ PQ AR+ + + Sbjct: 304 EIDAAIQQWCDTQTIASALEILQDADVPVGKIYSIRDMMSDPQFLARKMFEQ 355 >gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 190/409 (46%), Gaps = 28/409 (6%) Query: 8 LAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARV-DGLSSHFVWTN 66 L+G ++ H + P CT+ LA GA VIK+ER G GD RG + + S +F N Sbjct: 5 LSGYRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPEADSLYFTMLN 64 Query: 67 RSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIVCDI 126 +K S+TL+ K+ GK +++ L+++ DVLV+N APGA +G + + ++E +PR+IV + Sbjct: 65 HNKRSITLDTKNPKGKAVLETLIKECDVLVENFAPGALDRMGFTWERINELNPRMIVASV 124 Query: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVAK-AGCSIADIAAGMYAYSNILAAL 185 G+G GPY K Y+ + Q G S TG D G I D G++ ILAAL Sbjct: 125 KGFGP-GPYEHCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGILAAL 183 Query: 186 IQRGRDGRGSHI-----------------DLSMLEALAEWMSFPLYYAYQ-GASAPQ--- 224 +QR GRG + D LE +P Y G S P+ Sbjct: 184 LQRHASGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTGVMKEYPQYPDTPFGDSVPRAGN 243 Query: 225 -RSGAEHATIYPYGPFTAGDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFSSNALRH 283 G + +I + D + + W C+V+ ++ L +D +++ A R Sbjct: 244 ASGGGQPGSILKCKGWET-DPNAYIYFIAQGAVWAPICKVIGKEEWL-TDPEYATPASRL 301 Query: 284 EHRETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWTEVDTP 343 H + + + MT + + L++ I + +M ++ + P L EVD P Sbjct: 302 PHLKNIFATVEEWTKTMTKFEAMDILNKFDIPCGPILSMKEIAEEPSLRETGTIVEVDHP 361 Query: 344 V-GKVAAMLPPGANDRYDYRMEAIPALGQHTEAILGQLGYDAAGITALR 391 V GK + P + P LG+HTE +LGQLGY A I ALR Sbjct: 362 VRGKYLTVGNPIKLSDSPTDVTRSPLLGEHTEEVLGQLGYSAEDIAALR 410 >gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 147 bits (372), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 120/419 (28%), Positives = 191/419 (45%), Gaps = 31/419 (7%) Query: 5 TGPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARV-DGLSSHFV 63 + PL GI +I H A P C +QLA GA VIK+ERPG GD R + D + +F Sbjct: 2 SKPLDGIKIIDFTHVQAGPSCAQQLAWFGADVIKVERPGSGDATRTSLRDIPDADALYFT 61 Query: 64 WTNRSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIV 123 N +K SLTL+ K GK ++++L++Q+D++++N APGA +G + + + +PRLI+ Sbjct: 62 MLNSNKRSLTLDTKKAEGKEVLEKLIRQSDIMIENFAPGALDRMGFTWEYIQSLNPRLIL 121 Query: 124 CDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVAK-AGCSIADIAAGMYAYSNIL 182 + G+ + Y D K YD + Q+ G + TG D +G ++ D GM+ IL Sbjct: 122 ASVKGFSDGHFYEDLKVYDNVAQAAGGAATTTGFWDGPPTISGAALGDSNTGMHLAIGIL 181 Query: 183 AALIQRGRDGRGSHIDLSMLEALAEWMSFPLYYAYQGASAPQRSGA-EHATIYPYGPFTA 241 AAL R G G + +SM +A+ L + +R+G E YP+G FT Sbjct: 182 AALQHRHLTGLGQKVAVSMQDAVLNLCRVKL----RDQQRLERTGVLEEYPQYPHGTFTD 237 Query: 242 GDGKTVMLGLQNEREWKVFCE-----------VVLEDAALASDAR------------FSS 278 + G + W + C+ ++ A + AR +++ Sbjct: 238 VVPRGGNAGGGGQPGWILKCKGWENDPNAYIYFTIQGTAWEATARAIGKPEWVTDPAYAT 297 Query: 279 NALRHEHRETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWT 338 R + + I T AD + + L + I V +M ++ L + Sbjct: 298 AKARQDKIFDIFAYIETWLADKDKFEAIEILRKFDIPCGPVLSMKEIAYDESLRRSKSIV 357 Query: 339 EVDTPV-GKVAAMLPPGANDRYDYRMEAIPALGQHTEAILGQLGYDAAGITALRERGAV 396 EVD V GK + P + P LG+HT+ +L +LGY+A I A+ AV Sbjct: 358 EVDHKVRGKYLTVGSPIKMSGATVEITPSPLLGEHTDEVLAELGYNATQIAAIHSAAAV 416 >gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthinobacterium sp. Marseille] Length = 411 Score = 145 bits (365), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 117/410 (28%), Positives = 201/410 (49%), Gaps = 24/410 (5%) Query: 8 LAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARVDGLSSHFVWT-N 66 LAG+ ++ + H A P ++ LA +GA VIK+E P GD RG + G+ S + T N Sbjct: 5 LAGLRILDMTHVQAGPSASQLLAWMGADVIKLEPPQ-GDITRGQLRDIPGVDSLYFGTLN 63 Query: 67 RSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIVCDI 126 +K S+T+N+K + GK I LL + DVL++N PG G + + + +P LI+ I Sbjct: 64 CNKRSITVNMKTDEGKAIFADLLTKCDVLMENFGPGVLDRFGFTWERVRAINPMLIMASI 123 Query: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRD-DVAKAGCSIADIAAGMYAYSNILAAL 185 G+G GPY D KAY+ + Q+ G ++ TG D +G + D G++ ILAAL Sbjct: 124 KGFGSTGPYSDFKAYENVAQAMGGAMATTGFSDGPPCVSGAQVGDSGTGLHFVIGILAAL 183 Query: 186 IQRGRDGRGSHIDLSMLEALAEWMSFPL--YYAYQGASAPQRS-GAEHATIYPYGPFTAG 242 R + G G +++++M++++ + + + Q P+ S E P G +G Sbjct: 184 HHRVQYGEGQYVEVAMMDSVLNLIRMKMRDHERLQKGPLPEYSVPTEGLFSVPRGGNDSG 243 Query: 243 DGK--TVMLGLQNEREWKVFCEVVLEDAA------------LASDARFSSNALRHEHRET 288 G+ V+ + E ++ VV+++A L D RF++ R +++ Sbjct: 244 GGQLGNVLWCARGGAEEYLY--VVVQEAVWPALAKLVGGQHLLEDPRFANIESRRANQQA 301 Query: 289 LRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAARQRWTEVD-TPVGKV 347 + ++ A T +++ L++ + V + +L ++ L AR+ + EVD GK Sbjct: 302 MWAILNGFAAQYTKSELMTVLNEIDVPCGPVLSTAELAENEHLHAREMYIEVDHAQRGKY 361 Query: 348 AAMLPPGANDRYDYRMEAIPALGQHTEAILGQ-LGYDAAGITALRERGAV 396 + P + P LG+HT+ IL Q LGY+ + I LR A+ Sbjct: 362 WTVGMPIKLSASPAVVTPAPLLGEHTDEILQQVLGYEESRIAQLRSVKAI 411 >gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 419 Score = 145 bits (365), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 118/431 (27%), Positives = 188/431 (43%), Gaps = 54/431 (12%) Query: 5 TGPLAGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDARVDGLSS-HFV 63 T PLAG+ +I H A P CT+ LA GA VIK+ERPG GD R + G + +F Sbjct: 4 TLPLAGVKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPGKDALYFT 63 Query: 64 WTNRSKESLTLNLKDEAGKRIIDQLLQQADVLVQNLAPGAAAALGLSAQVLHERHPRLIV 123 N +K SLTL+ K + GK ++++L++++DV+V+N PGA +G S + + E +P +I+ Sbjct: 64 MLNSNKRSLTLDTKTQEGKEVLEKLIKESDVMVENFGPGALDRMGFSWERVQELNPGMIM 123 Query: 124 CDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTRDDVAK-AGCSIADIAAGMYAYSNIL 182 + G+ + Y D K Y+ + Q G S TG D + ++ D GM+ IL Sbjct: 124 ASVKGFSDGHHYEDLKVYENVAQCAGGAASTTGFWDGPPTVSAAALGDSNTGMHLAIGIL 183 Query: 183 AALIQRGRDGRGSHIDLSMLEALAEWMSFPLYYAYQGASAPQRSG-AEHATIYPYGPFT- 240 AL+ R + G+G + +SM +A+ L + + G E YP+G FT Sbjct: 184 TALMGRQKTGKGQKVAVSMQDAVLNLCRVKL----RDQQRLDKIGYLEEYPQYPHGKFTD 239 Query: 241 -----------------------AGDGKTVMLGLQNEREWKVFCEVVLEDAALASDARFS 277 D + W C+ + ++ +A D ++ Sbjct: 240 VVPRGGNAGGGGQPGWVLKCKGWETDPNAYIYFTIQGHAWAPICKALGKEEWIA-DPAYN 298 Query: 278 SNALRHEHRETLRQLILTMFADMTAEQVVARLDQAQIANARVNTMHDLWQHPQLAAR--- 334 + R + + I D T + V L + I A V +M +L L Sbjct: 299 TAEARQDKIFDIFATIEDWLKDKTKFEAVDILRKYDIPCAPVLSMKELAADKSLRESGSI 358 Query: 335 ---------QRWTEVDTPVGKVAAMLPPGANDRYDYRMEAIPALGQHTEAILGQLGYDAA 385 +++ V +P+ K + M P + P LG+HT+ +L QLGY Sbjct: 359 VEVEHKDRGEKYLTVGSPI-KFSDMKP---------EITGSPLLGEHTDEVLAQLGYSKE 408 Query: 386 GITALRERGAV 396 I AL AV Sbjct: 409 QIAALHAAKAV 419 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 894,913 Number of extensions: 35670 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 6 Length of query: 396 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 311 Effective length of database: 906,776 Effective search space: 282007336 Effective search space used: 282007336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)