BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2802.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980550|ref|YP_001353193.1| citrate lyase beta chain [Janth...    64   9e-12

>gi|152980550|ref|YP_001353193.1| citrate lyase beta chain
           [Janthinobacterium sp. Marseille]
          Length = 323

 Score = 64.3 bits (155), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 29/254 (11%)

Query: 35  VIVDLEDAVAP-SQKEAARAMLAHWLQEQAAQPRIWVRINAADTVWHQQDL---LTFSAP 90
           +  D ED  A  ++K+ A  +      E+    RI  R++   + + +QD+   L  +A 
Sbjct: 46  ITFDCEDGAAHGNEKDHAHLLGTLVAGEENQFARIGARVHDVTSEFFEQDIEIILQHAAQ 105

Query: 91  SLAGIVLPK----AEDAATVASVAAHLGAGCR----LIALIESAAGLAAMRQIAAVPGVQ 142
            LA +V+PK    A+    +A V  H     R    +  LIE+   LA +  IAA+P V+
Sbjct: 106 KLAYLVVPKVDSLADTVNAIALVNRHAHKQGREQLPVHVLIETHGALADVFAIAALPQVE 165

Query: 143 RLAFGSIDAQLDLRMQCGPQEEELM--------PL----RVEMVMASRLAGIAPPIDGVT 190
            L+FG +D    +    G      M        PL    ++E+  A    G  P    VT
Sbjct: 166 CLSFGVMDF---VSAHYGAIPGNAMRSPGQFTHPLVARAKLEIAAACHAHGKTPS-HNVT 221

Query: 191 TDFNDDALLARMVQQAR-RLGFGAKLCIHPRQVDGVRHGFMPSEQELAWAEEVMAAVRAS 249
           T+ ND +++A    +A    G+     IHP Q+  +   F P   E+  A E++A   A 
Sbjct: 222 TEINDTSVVASDAHRAAAEFGYTRMWSIHPNQIKPILKSFAPRLSEVNEAAEILAQAHAI 281

Query: 250 DGGAISFKGKMIDK 263
             G I   GK+ D+
Sbjct: 282 QWGPIQHNGKLHDR 295


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 614,075
Number of extensions: 22515
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)