BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2801.p (374 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogen... 219 2e-58 gi|152980956|ref|YP_001352862.1| bifunctional glutathione-depend... 204 7e-54 gi|152980154|ref|YP_001353562.1| alcohol dehydrogenase (NADP+) [... 73 2e-14 gi|152980998|ref|YP_001352241.1| NADPH2:quinone reductase [Janth... 70 2e-13 >gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogenases, class III [Janthinobacterium sp. Marseille] Length = 368 Score = 219 bits (558), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 194/356 (54%), Gaps = 4/356 (1%) Query: 22 PLKIEQLDLDPPGPGEVLVKMKAAGLCHSDLSVITGVRPRPV-PMALGHEASAEVVQVGS 80 PL IE++DL P GEVLV++KA G+CH+D ++G P + P LGHE + VV VG Sbjct: 14 PLTIEEVDLAGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVVDVGP 73 Query: 81 GVTDLRAGDLVVLVFVPSCGHCLPCMEGRPALCEPGAATNTVGQLLSGQRRLHDGSGHVH 140 GVT L+ D V+ ++ P C C C+ + LC+ +T G + R S + Sbjct: 74 GVTTLKKDDHVIPLYTPECRQCKFCLSRKTNLCQAIRSTQGRGLMPDATSRFSLDSKPLF 133 Query: 141 HHLGVSAFADHAVVSSRSCVKIEADIDPVEAALFGCAVLTGVGAAVNTAEVKAGTTAAVL 200 H++G S F+++ VV + KI D +A GC V TGVGA V +A+V+AG V Sbjct: 134 HYMGTSTFSNYIVVPEIALAKIREDAPFDKACYIGCGVTTGVGAVVFSAKVEAGANVVVF 193 Query: 201 GLGGVGLCAMLGALASGAREVIAVDLHDSKLEVARALGATATVNARD-PDVVEKVKALTR 259 GLGG+GL + A GA ++I VD++ ++E+AR G T VN ++ +VV+ + LT Sbjct: 194 GLGGIGLNVIQAAKMVGADKIIGVDINPGRIEMARKFGMTHFVNPKEVENVVDHIVQLTD 253 Query: 260 GGVDYAFEMAGSVQAMEAAYRMTRRG-GMTVTAGLPAPNQNWALQQVSLVAEERTVKGSY 318 GG DY+FE G+ M A +G G + G+ A Q + + LV R KGS Sbjct: 254 GGADYSFECIGNTTTMRQALECCHKGWGQSFIIGVAAAGQEISTRPFQLVT-GREWKGSA 312 Query: 319 IGSCVPVRDIPRYIGLYQAGKLPVDKLMGQRLALADINRGFDRLHSGEGLRDLIVF 374 G D+P+ + Y GKL +D L+ L L IN GFD + SGE +R ++++ Sbjct: 313 FGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDLMKSGESIRSVVLY 368 >gi|152980956|ref|YP_001352862.1| bifunctional glutathione-dependent formaldehyde dehydrogenase /alcohol dehydrogenase class III oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 368 Score = 204 bits (519), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 197/377 (52%), Gaps = 12/377 (3%) Query: 1 MKIHAAVLREMTEAHPFAVSQPLKIEQLDLDPPGPGEVLVKMKAAGLCHSDLSVITGVRP 60 MK AAV + Q L IE+++L P GEVLV++KA G+CH+D ++G P Sbjct: 1 MKTKAAV--------AWKAGQALTIEEVELGGPREGEVLVEIKATGICHTDYYTLSGADP 52 Query: 61 RPV-PMALGHEASAEVVQVGSGVTDLRAGDLVVLVFVPSCGHCLPCMEGRPALCEPGAAT 119 + P LGHE + VV+VG GV L+ D V+ ++ P C C C+ + LC+ +T Sbjct: 53 EGIFPAILGHEGAGVVVEVGPGVKSLKKDDHVIPLYTPECRECKFCLSRKTNLCQKIRST 112 Query: 120 NTVGQLLSGQRRLHDGSGHVHHHLGVSAFADHAVVSSRSCVKIEADIDPVEAALFGCAVL 179 G + R + H++G S F+++ VV + KI D + GC V Sbjct: 113 QGRGLMPDATSRFSIDGKPLFHYMGTSTFSNYIVVPEIALAKIREDAPFDKVCYIGCGVT 172 Query: 180 TGVGAAVNTAEVKAGTTAAVLGLGGVGLCAMLGALASGAREVIAVDLHDSKLEVARALGA 239 TGVGA + TA+V+AG V GLGG+GL + A GA ++I VDL+ ++ +AR G Sbjct: 173 TGVGAVLFTAKVEAGANVVVFGLGGIGLNVIQAAKMVGADKIIGVDLNPAREAMARKFGM 232 Query: 240 TATVN-ARDPDVVEKVKALTRGGVDYAFEMAGSVQAMEAAYRMTRRG-GMTVTAGLPAPN 297 T +N ++ +VV+ + LT GG DY+FE G+V M A +G G ++ G+ Sbjct: 233 THFINPSKVENVVDAIVQLTDGGADYSFECIGNVHTMRQALECCHKGWGQSIVIGVAEAG 292 Query: 298 QNWALQQVSLVAEERTVKGSYIGSCVPVRDIPRYIGLYQAGKLPVDKLMGQRLALADINR 357 + + LV R KGS G D+P+ + Y GKL +D L+ L L IN Sbjct: 293 AEISTRPFQLVT-GREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINE 351 Query: 358 GFDRLHSGEGLRDLIVF 374 GFD + SGE +R ++++ Sbjct: 352 GFDLMKSGESIRSVVIY 368 >gi|152980154|ref|YP_001353562.1| alcohol dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 348 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 149/366 (40%), Gaps = 41/366 (11%) Query: 11 MTEAHPFAV---SQPLKIEQLDLDPPGPGEVLVKMKAAGLCHSDLSVITGVRPRPV-PMA 66 M AH +AV PL Q + PGP +V V + G+CHSDL + PM Sbjct: 1 MAHAHGYAVHDAQSPLVPFQFERREPGPHDVCVDILYCGICHSDLHQARNDWSNSLYPMV 60 Query: 67 LGHEASAEVVQVGSGVTDLRAGDLV-VLVFVPSCGHCLPCMEGRPALCEPGAATNTVGQL 125 GHE V VG+ V + GD+ V V SC C C C GA Sbjct: 61 PGHEIVGRVSAVGAHVKKFKVGDIAGVGCMVDSCRQCAACNADLEQYCAEGATWT----- 115 Query: 126 LSGQRRLHDGSGHVHHHLGVSAFADHAVVSSRSCVKIEADIDPVEAALFGCAVLTGVGAA 185 +G R D L ++DH VV R VK+ ++D A CA +T + Sbjct: 116 YNGTERGSD-------QLTFGGYSDHVVVEERFVVKVPGNLDIKAVAPLLCAGITTY-SP 167 Query: 186 VNTAEVKAGTTAAVLGLGGVGLCAMLGALASGAREVIAVDLHDSKLEVARALGATATVNA 245 + +V AG V+GLGG+G + A A GA V+ D + R LGA + + Sbjct: 168 LRHVKVGAGQKVGVIGLGGLGHMGVKFAKAMGAHVVMITTSPDKGKDATR-LGADEILVS 226 Query: 246 RDPDVVEKVKALTRGGVDYAFE---MAGSVQAMEAAYRMTRRGGM--TVTAGLPAPNQNW 300 RDP + A G D+ + V ++ + GM +TA P N Sbjct: 227 RDPAAM----AQHAGSFDFLLNTIPVGHDVNPYLGLLKLDGKMGMVGVLTAIDPIIGGN- 281 Query: 301 ALQQVSLVAEERTVKGSYIGSCVPVRDIPRYIGLYQAGKLPVDKLMGQRLALADINRGFD 360 L+ +++ GS IG +++ + G + + D M +A+ D+N ++ Sbjct: 282 ------LIFGRKSIFGSGIGGMAETQEMLDFCGQHN---IVSDVEM---IAIKDVNHAWE 329 Query: 361 RLHSGE 366 R+ + Sbjct: 330 RMEKND 335 >gi|152980998|ref|YP_001352241.1| NADPH2:quinone reductase [Janthinobacterium sp. Marseille] Length = 324 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 134/344 (38%), Gaps = 56/344 (16%) Query: 27 QLDLDPPGPGEVLVKMKAAGLCHSDLSVITGVRPRPVPMALGHEASAEVVQVGSGVTDLR 86 ++DL PGPGE L+ A GL + D+ G P+ +P LG E + V VG+GVT +R Sbjct: 20 EVDLPAPGPGEALIWQHACGLNYIDVYFRMGTYPQQLPAGLGMEGAGVVEAVGAGVTHIR 79 Query: 87 AGDLVVLVFVPSCGHCLPCMEGRPALCEPGAATNTVGQLLSGQRRLHDGSGHVHHHLGVS 146 GD V GRP PG Sbjct: 80 PGDRVAYA-------------GRP----PG------------------------------ 92 Query: 147 AFADHAVVSSRSCVKIEADIDPVEAALFGCAVLTGVGAAVNTAEVKAGTTAAV-LGLGGV 205 A+A+ V+ + VK+ I AA LT T ++ G T GGV Sbjct: 93 AYAEARVLPADVLVKLPEAISFETAAAMMLQGLTVQYLFRRTFRLQGGETILFHAAAGGV 152 Query: 206 GLCAMLGALASGAREVIAVDLHDSKLEVARALGATATVNARDPDVVEKVKALTRG-GVDY 264 GL A A A G + V D K E+A+A G T+N + VE+VK +T G GV Sbjct: 153 GLIACQWARALGVTMIGTVG-SDEKAELAKAHGCVHTINYNKENFVERVKEITGGKGVPV 211 Query: 265 AFEMAGSVQAMEAAYRMTRRGGMTVTAGLPAPNQNWALQQVSLVAEERTVKGSYIGSCVP 324 ++ G + ++ G + G P ++L +++ + S Sbjct: 212 VYDSIGKDTFTGSLDCLSPLGMLVSFGGASGPVPPFSLNELASRGSLFVTRPSLFNYIAK 271 Query: 325 VRDIP----RYIGLYQAGKLPVDKLMGQRLALADINRGFDRLHS 364 D+ G+ ++GK+ + + QR AL D+ + L S Sbjct: 272 RDDLETMAAELFGMVESGKIKIG--INQRYALKDVAQAHRDLES 313 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 773,444 Number of extensions: 29811 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 4 Length of query: 374 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 289 Effective length of database: 906,776 Effective search space: 262058264 Effective search space used: 262058264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)