BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2800.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding peripl...   372   e-104

>gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding
           periplasmic protein [Janthinobacterium sp. Marseille]
          Length = 365

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/319 (55%), Positives = 233/319 (73%)

Query: 18  LTLPLAAKVALAQSTIVIKFSHVVANDTPKGKGAERFKELAEKATNGRVKVEVYPNSTLY 77
           L L L + +  AQ+T VIKFSHV   D+PKGK A RFKEL E+ +  R++V+VYPN+ LY
Sbjct: 40  LALSLTSVIVSAQTTTVIKFSHVSPADSPKGKAALRFKELVERNSQRRIRVDVYPNNLLY 99

Query: 78  KDKEELEALQLGSVQMLAPSLAKFGPLGAKEFEVFDLPYIFPNKAVLKRVTEGPIGQGLF 137
           K+ +ELEALQLG+VQMLAPSLAK    G ++FEVFDLP+ F +K  + RVTEGPIG+ L 
Sbjct: 100 KESDELEALQLGAVQMLAPSLAKLAQFGLQDFEVFDLPFAFTDKESVARVTEGPIGKTLL 159

Query: 138 QRLESRGIKGLAYWDNGMKVMTANRPLHQVADFRALKMRIQSSKVLDEQFRALKANPQVL 197
           ++LES+G+ GLAYWDNG K+M+ N+ L   +DF  L MRI SSKVL  Q  AL A P +L
Sbjct: 160 RKLESKGMVGLAYWDNGFKIMSGNKRLRVPSDFAGLAMRIHSSKVLSWQMEALGAIPLIL 219

Query: 198 AFSEVYQAMQTGVVDGSENTPSNIYTQKMYEVQSNLTVSDHGYIGYAVIVNKKFWDALPA 257
              EVY A+Q GVVDG+E +P N Y +K YEVQSN+T+S+HGY+G AV+VNKKFWD LP+
Sbjct: 220 DAYEVYPALQGGVVDGAETSPVNFYARKWYEVQSNVTISNHGYLGSAVVVNKKFWDGLPS 279

Query: 258 DVRTQLEGAMKEATIYANNIAQKENDDALAAIKASGKTKVYTLSEEEKTQWRRALLPVHK 317
           D+R  ++ AM+EAT Y NN+A++EN  AL  IK S K KVYTL+ +E   WR+AL PV K
Sbjct: 280 DLRNTIDLAMREATSYGNNLAEEENAAALQWIKKSKKVKVYTLTAQETEAWRQALQPVQK 339

Query: 318 SMATRVGPELIEAIYKESE 336
            +  R+G  ++  + ++++
Sbjct: 340 ELEARIGKAIVYGVTRDAD 358


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 715,661
Number of extensions: 27622
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)