BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2798.p
         (348 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979967|ref|YP_001351986.1| N-acetyl-gamma-glutamyl-phospha...    64   1e-11

>gi|152979967|ref|YP_001351986.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Janthinobacterium sp. Marseille]
          Length = 345

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 125/308 (40%), Gaps = 48/308 (15%)

Query: 62  LRGRTDLRVLTLPPAERKDARRRAEAINSADIALLCLPDAAAREAVALIENTKVRVIDAS 121
           LRGR DL   + P   +         +   D+     P   A      +    V+VID +
Sbjct: 49  LRGRVDL-AFSAPEKAK---------LTECDVVFFATPHGVAMAQAPELLAAGVKVIDLA 98

Query: 122 SAHRTS-----PGWVYGFPEMAPG------------QAEAIASAQRISNPGCYPTGAIAL 164
           +  R         W Y  P   P               +AI  A+ + NPGCYPT     
Sbjct: 99  ADFRLQDIAAFEKW-YKIPHSCPELLKEAAYGLVELNRDAIRKARIVGNPGCYPTTMQLG 157

Query: 165 LRPLVQAGLVPTDYALAIHAVSGYSGGGR-AQVEQYEGPQAASAAPFVTYGLGLAHKHPP 223
           L PL+QAG++   + +A    SG SG GR A+V       + +   F  YG+   H+H P
Sbjct: 158 LAPLLQAGVIDASHLIA-DCKSGVSGAGRKAEVATL---FSEAGDNFKAYGVS-GHRHSP 212

Query: 224 EMQLHAGLSQRP----IFVPSYGAFGQGIVLSIALHQRLLPAKASLERLRAALQAHYAGA 279
           E      L  +     +F P      +G      +H  L  A+ + +   AALQA +  A
Sbjct: 213 ETLERLRLLTKDKVGLLFTPHLVPMIRG------MHSTLY-ARLTKDIDNAALQALFEKA 265

Query: 280 R-HVHVLDAEQSAATAQLDPTRHNGSNDMTLGVFGNATEGHILLCAVFDNLGKGASGAAV 338
             +   +D     +  +   TR   SN + + +        +++  V DNL KGASG AV
Sbjct: 266 YGNEPFIDVMPFGSHPETRSTR--ASNMLRIALHRPDDGDTVVVLVVQDNLVKGASGQAV 323

Query: 339 QNLDLLLG 346
           Q ++L+ G
Sbjct: 324 QCMNLMFG 331


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 838,660
Number of extensions: 35338
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 264
Effective length of database: 910,473
Effective search space: 240364872
Effective search space used: 240364872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)