BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2797.p (307 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 84 1e-17 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 76 3e-15 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 76 3e-15 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 67 2e-12 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 65 4e-12 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 11/250 (4%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 ++L L+ +VA+A F AA A +A PT+S+ I +LE+ +G L R S++ + + Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQG-LAGRVRLGASTGAIAYLLPQVLERLGQSHPG 122 GA +VA+A ++L A++E+ +Q + L G RLG YLLP +++ + + P Sbjct: 77 GAQIVAQAERVLEQT-AAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQ 135 Query: 123 IDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPA--AWHAP 180 + + + + + L L +G LD +VALP P GL V+P +P + VP W Sbjct: 136 MPLVLQENFTVKLLELLRQGELDAAIVALP-FPDQGLLVQPVYDEPFVVAVPKHHKWANR 194 Query: 181 RVVTPAWLAAQPLIL--NAPETRLSRLSA----EWFAAAGEHPLPRIQLNFNDAIKSLVA 234 V+ L ++ ++L N R L F+ +G+ + + + I+ +VA Sbjct: 195 DSVSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVA 254 Query: 235 AGYGATLLPH 244 +G G T+LP Sbjct: 255 SGIGITVLPQ 264 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 6/240 (2%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 + L LR VA+A+ GSF AAA H V+ HI +LE+ +GA L+ R + RPS Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERG-TPARPSSA 59 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGI 123 G L+A A +++ A ++AL + ++G +R+GA A LP +L SHP + Sbjct: 60 GFALMAYAERMIQAHDEALALF--KNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPEV 117 Query: 124 DVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWHAPRVV 183 D+++ + + ++ L EG D +A K +R + V+ P Sbjct: 118 DLKLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREELVLVSASPMKSMPSAD 177 Query: 184 TPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGATLLP 243 T A+ L+ + R+ A +G + DAI V AG G L+P Sbjct: 178 T--LRASTFLVFGQGCSYRQRVDV-LLADSGVFSSRMVDFGSLDAILGCVGAGMGYALMP 234 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 2/141 (1%) Query: 9 LRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGIGATLV 68 LR+ VA+ D GSF AA ++HL TVS I LEE+ LL R V + G +L+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 69 ARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGIDVQIH 128 AR++L ++A+E+V + V+ G ++LG A+ L VL ++PGI ++I Sbjct: 67 GYARRILQLMDEAVEQVTQSVE--QGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEIT 124 Query: 129 ILTSQETLSQLVEGSLDIGLV 149 S + +G LD+ LV Sbjct: 125 SGLSHDLYRMFQQGKLDLALV 145 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 13/278 (4%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 + L LR +A A SF A+ +LH+ PT+S I ++E+ +G L R V+ + Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGI 123 G A++ L + L+ + GRV G + + LP +L + +PGI Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 124 DVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWHAPRV- 182 + + L S E +L++G L G+ P S + V+P P+ V H P V Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSS-TEQINVEPLFTVPLALVV--GDHHPLVG 177 Query: 183 ---VTPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGA 239 +T L L++ + E ++ A G P +++N + I + V A Sbjct: 178 SAGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLA 237 Query: 240 TLLPHEASAQGRTVPLDPRIVMRPLRPALWRPLGIAHR 277 T+L V P + PL P + +G+ R Sbjct: 238 TIL------SANLVDEMPGLHQVPLTPTVTHTVGLFTR 269 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 11/258 (4%) Query: 3 ELSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSG 62 + L +LR V +A+ F AA LH+ P +S I LE +G L R V + Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 63 IGATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPG 122 G L+ A+++L + + R G +GR+ L + A +LP L +++P Sbjct: 62 AGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQ 121 Query: 123 IDVQIHILTSQETLSQLVEGSLDIGLVA--LPQSPVGGLTVKPWRRDPVMAFVPAAWHAP 180 +++ + T+ L +L +G +D+GL+ LP L P +P++ VP A Sbjct: 122 VEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAV 181 Query: 181 R---VVTPAWLAAQPLILN----APETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLV 233 R V +A PLI+ AP + L+ + AG P + I LV Sbjct: 182 RGKQTVALQAVAELPLIIFPRRIAPAFHDAILAC--YRDAGLTPHIGQEAIQMQTIIGLV 239 Query: 234 AAGYGATLLPHEASAQGR 251 +AG G L+P S R Sbjct: 240 SAGMGIALVPQSVSNLKR 257 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 663,665 Number of extensions: 26328 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 24 Length of query: 307 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 224 Effective length of database: 914,170 Effective search space: 204774080 Effective search space used: 204774080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)