BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2792.p (513 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980207|ref|YP_001352950.1| lysyl-tRNA synthetase [Janthino... 871 0.0 gi|152979848|ref|YP_001354789.1| aspartyl-tRNA synthetase [Janth... 70 4e-13 >gi|152980207|ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 511 Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/515 (83%), Positives = 459/515 (89%), Gaps = 6/515 (1%) Query: 1 MTTQNTPAAQP-AADENSIIAERRAKLAAIREQGIAFPNDFRPANKAADLHSQYDGFENE 59 MTT N AA DEN IIAERRAKL+A+REQGIAFPNDFRP +KAADLH +YDG E Sbjct: 1 MTTHNDDAAAALPQDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLHEKYDGKTRE 60 Query: 60 ALEAEPVTVTVAGRMMLKRVMGK-AAFATLQDASGARADGRIQLYVTKDVTGEDAMAAFK 118 LEAEPVTVT+AGRMMLKR GK AAFATLQDASGA+ADGRIQ+Y T D+TGE AMAA Sbjct: 61 ELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLDLTGEAAMAALH 120 Query: 119 HYDLGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDL 178 HYDLGDILG GTLFKTKT EL+IKVT+L+L+TKSLRPLPDKFHGLADQE KYRQRYVDL Sbjct: 121 HYDLGDILGVVGTLFKTKTDELTIKVTELRLLTKSLRPLPDKFHGLADQETKYRQRYVDL 180 Query: 179 IMSEETRRTFKARTAAMSSIRRFMESNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQM 238 IM+E+TRRTFKARTAA+SSIRRFM N FMEVETPMLH IPGGAAAKPF+THHNALDM+M Sbjct: 181 IMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPMLHTIPGGAAAKPFVTHHNALDMEM 240 Query: 239 FMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFT 298 F+RIAPELYLKRLVVGGF+RVFE+NRNFRNEGVS RHNPEFTMMEFYAAY DY+WLM FT Sbjct: 241 FLRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFT 300 Query: 299 EQVIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPDYTEAQLADIDFLRTE 358 E VIRQAAIDAHGTA LTY GRELDL+KPF RLTI GAI KYAP YT QL D +F++ E Sbjct: 301 EAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAINKYAPQYTNEQLHDAEFIKAE 360 Query: 359 LKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGI 418 LKKFGVK P A +G+GALQLALFEETAE+QLW PTYIIDYPVEVSPLARASDTVAGI Sbjct: 361 LKKFGVK----PHAHSGLGALQLALFEETAEAQLWEPTYIIDYPVEVSPLARASDTVAGI 416 Query: 419 TERFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMP 478 TERFELF+ GREIANGFSELNDAEDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMP Sbjct: 417 TERFELFMVGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 476 Query: 479 PAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 P GGCGIGIDRLMM+ITDSPNIRDV+LFPHLRRED Sbjct: 477 PTGGCGIGIDRLMMIITDSPNIRDVLLFPHLRRED 511 >gi|152979848|ref|YP_001354789.1| aspartyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 601 Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 27/303 (8%) Query: 49 LHSQYDGFENEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGARADGRIQLYVTKD- 107 + + Y G +EAL + TV++ G + +R G F L+D +G +Q+ D Sbjct: 3 MRTHYCGLTSEALLDQ--TVSLCGWVHRRRDHGGVIFIDLRDR-----EGLVQVVCDPDR 55 Query: 108 VTGEDAMAAFKHYDLGDILGA-----EGTLFKTKT-GELSIKVTKLKLITKSLRPLPDKF 161 V A A ++ I G EGT T G++ + +L+++ S+ P Sbjct: 56 VDVFKAAEAVRNEFCLRITGVVRSRPEGTSNSNLTSGKIEVLAHELEVLNASVTPPFQLD 115 Query: 162 HGLADQEMKYRQRYVDLIMSEETRRTFKARTAAMSSIRRFMESNGFMEVETPML-HPIPG 220 + + R +DL + + + R +R+F+++ GF+++ETPML P Sbjct: 116 DDNLSETTRLTHRVLDL-RRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPE 174 Query: 221 GAAAKPFITHHNALDMQMFMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFT 280 GA + NA + +P+L+ + L+V F+R +++ + FR+E + PEFT Sbjct: 175 GARDYLVPSRVNAGHF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFT 233 Query: 281 MMEFYAAYVDYQWLMGFTEQVIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKY 340 ++ ++++ Q + E +IR ++ +DL PF + A+ Y Sbjct: 234 QIDCETSFMNEQEIRDLFEGMIR----------LVFKNALNVDLPNPFPVMDYATAMGLY 283 Query: 341 APD 343 D Sbjct: 284 GSD 286 Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 376 IGALQLALFEETAESQLWNPTY-IIDYPVEVSPLARASDTVAGITERFELFITGREIANG 434 + + +FE E+Q W+ T+ P + +D I + +++ + G E+ G Sbjct: 436 LWVVDFPMFEFDEENQRWSATHHPFTAPKDGHEDLMETDPGKCIAKAYDMVLNGWELGGG 495 Query: 435 FSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPAGGCGIGIDRLMMLI 494 ++ A+ Q+ F A G EEA + AL+YG PP GG G+DR++ ++ Sbjct: 496 SVRIHRADVQSKVFRAL----KIGAEEAQLKFGFLLDALQYGAPPHGGLAFGLDRIVTMM 551 Query: 495 TDSPNIRDVILFPHLRR 511 T + +IRDVI FP +R Sbjct: 552 TGAESIRDVIAFPKTQR 568 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,102,981 Number of extensions: 44122 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 426 Effective length of database: 899,382 Effective search space: 383136732 Effective search space used: 383136732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)