BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2791.p
         (337 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980486|ref|YP_001352951.1| peptide chain release factor 2 ...   657   0.0  
gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 ...   215   3e-57

>gi|152980486|ref|YP_001352951.1| peptide chain release factor 2
           [Janthinobacterium sp. Marseille]
          Length = 367

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/337 (92%), Positives = 326/337 (96%)

Query: 1   VKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAR 60
           VKSEKL+QVN ELEDP+VWNDQKRAQDLGKEKKSLEAIVHTLIKIDSEL DARDLFEMAR
Sbjct: 31  VKSEKLDQVNGELEDPDVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELNDARDLFEMAR 90

Query: 61  EEKDEDTIVAIEADAENLKKMVEEMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASML 120
           EEKDEDTIVAIE DA+ L K+VE MEFRRMFS PMDANNCFIDIQAGAGGTEAQDWASML
Sbjct: 91  EEKDEDTIVAIENDAQELLKLVEGMEFRRMFSNPMDANNCFIDIQAGAGGTEAQDWASML 150

Query: 121 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD 180
           LRQYLRYCERKGFK EILEQSDGEVAGIKTAT+KVEG+YAYGFLRTETGVHRLVRKSPFD
Sbjct: 151 LRQYLRYCERKGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLVRKSPFD 210

Query: 181 SSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPS 240
           S+NGRHTSFSSLFVYPEVD+S EI+INPADVR+DTYRASGAGGQHINKTDSAVRLTH PS
Sbjct: 211 SANGRHTSFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPS 270

Query: 241 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL 300
           GIVVQCQNDRSQHRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIRSYVL
Sbjct: 271 GIVVQCQNDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIRSYVL 330

Query: 301 DQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 337
           DQSRIKDLRTNFETGNTKAVLDGD+DDFIAASLKQGV
Sbjct: 331 DQSRIKDLRTNFETGNTKAVLDGDLDDFIAASLKQGV 367


>gi|152980137|ref|YP_001351903.1| peptide chain release factor 1
           [Janthinobacterium sp. Marseille]
          Length = 360

 Score =  215 bits (547), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 203/344 (59%), Gaps = 28/344 (8%)

Query: 3   SEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVH---TLIKIDSELTDAR------ 53
           +E+L+++N  L   +  ++    + + +E   L  +V       + DS++ DA+      
Sbjct: 13  TERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADSDIQDAQGMLSDP 72

Query: 54  DLFEMAREEKDEDTIVAIEADAENLKKMVEEMEFRRMF--SGPMDANNCFIDIQAGAGGT 111
           D+ E A+EE     I A +   E L     E++ ++M     P D  N F++I+AG GG 
Sbjct: 73  DMKEFAQEE-----IAAAKTRMEQL-----EIDLQKMLLPKDPNDDRNIFLEIRAGTGGD 122

Query: 112 EAQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVH 171
           EA  +A  LLR Y R+ ER  ++ E++ +S  EV G K   +++ G  AY  L+ E+G H
Sbjct: 123 EAALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESGGH 182

Query: 172 RLVRKSPFDSSNGR-HTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTD 230
           R V++ P   + GR HTS  ++ + PE DE  ++ INPAD+R+DTYRASGAGGQHINKTD
Sbjct: 183 R-VQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTD 241

Query: 231 SAVRLTHAPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVG 290
           SAVR+TH P+GIVV+CQ+DRSQH+N+A A  +L A++ +++LR++ S++      K+ +G
Sbjct: 242 SAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATR--KSLIG 299

Query: 291 WG---HQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAA 331
            G    +IR+Y   Q R+ D R N        ++DGD+ +   A
Sbjct: 300 SGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNA 343


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 755,609
Number of extensions: 30332
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 253
Effective length of database: 910,473
Effective search space: 230349669
Effective search space used: 230349669
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)