BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2789.p
         (202 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982621|ref|YP_001352952.1| hypothetical protein mma_1262 [...   323   3e-90

>gi|152982621|ref|YP_001352952.1| hypothetical protein mma_1262
           [Janthinobacterium sp. Marseille]
          Length = 241

 Score =  323 bits (829), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 148/202 (73%), Positives = 179/202 (88%)

Query: 1   MGQSDSNRVATLAMRANLDSLYLLMSKLYRRNPAEWKKTAASREEAEKKVRQAIEQRQAW 60
           MGQSD+NR+AT+AMR NL+SLYLLM KLYRRNPAEW+KT  SREE+ K+VR+A+EQRQ W
Sbjct: 40  MGQSDTNRIATIAMRDNLESLYLLMDKLYRRNPAEWRKTGISREESIKRVREAVEQRQPW 99

Query: 61  PELQGKRDIQAMTLALSADFKGDRVAAFIDATADMIIVAHGNKIEFFLVDGLDAQHLYNA 120
           P LQG+RDI+A++LAL+ DF GDRVAA I ++ADMII AH  K EFFL+DGLDAQH+YNA
Sbjct: 100 PGLQGQRDIKALSLALTPDFAGDRVAALIYSSADMIIAAHDGKTEFFLIDGLDAQHIYNA 159

Query: 121 ARNVEIAAWVLASRRSAAGVPLLLSDEIGSEARNLSFEREFGKIVGRLDLLAEFMTERYR 180
           ARN+EIA W+L SRR+++G  LLL+D+I    RNLSFEREFGK+VGRLDL+AEF+TE+YR
Sbjct: 160 ARNIEIAVWLLGSRRNSSGKVLLLADDISENGRNLSFEREFGKVVGRLDLMAEFLTEKYR 219

Query: 181 RAGISYVQNLLGGSFLQFLPVR 202
           RAGI+YVQNL+GGSFLQFLPVR
Sbjct: 220 RAGITYVQNLIGGSFLQFLPVR 241


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 433,094
Number of extensions: 16496
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 123
Effective length of database: 928,958
Effective search space: 114261834
Effective search space used: 114261834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)