BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2788.p (554 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 159 4e-40 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 143 2e-35 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 139 3e-34 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 134 1e-32 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 134 2e-32 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 3/185 (1%) Query: 359 LSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFKPI 418 ++ KLH+AE+Q QA HD LTGLPNR +L +RM+ A+ H+ R A+ FLDLD FK I Sbjct: 261 ITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFI 320 Query: 419 NDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAEKC 478 ND+LGH+ GD +L+ +RL R DT+AR GGDEFVLL+TD QP E ++ Sbjct: 321 NDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTD--QPNEEAITHTMQRV 378 Query: 479 IKVVSEPLHLAQGEYQLGVSVGIAVC-DGSCDADSLLQAADQAMYAAKGNGRGGYVIAPA 537 + VS+P E+Q+ S+G+ +C D DA++LL+ AD AMY AK GR + A Sbjct: 379 LHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSA 438 Query: 538 RPTSS 542 SS Sbjct: 439 EMNSS 443 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 10/195 (5%) Query: 358 LLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFKP 417 L+ L L EL QA D LT LPNR +L +R++ + A R ++ AL+F+DLDGFK Sbjct: 248 LVRSLALANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKA 307 Query: 418 INDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAEK 477 IND+LGH GDL+L +V +R+R R DT AR+GGDEFV+LI ++ +P E A V A+K Sbjct: 308 INDSLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLI-EVNEP-EDAASV-ADK 364 Query: 478 CIKVVSEPLHLAQGEYQLGVSVGIAVC--DGSCDADSLLQAADQAMYAAKGNGRGGYVIA 535 +++P +AQ + S+GIAV DGS D L+ AD AMY K GR GY Sbjct: 365 LCTTLNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIH-ADAAMYHTKSTGRNGYHFF 423 Query: 536 PARPTSSANASAHRQ 550 A S N +AH Q Sbjct: 424 EA----SMNINAHNQ 434 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 2/170 (1%) Query: 366 QAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFLDLDGFKPINDTLGHK 425 + ELQ A +DVLTGLPNR +L R++ A+ A VA+ FLDLDGFK +ND+LGH Sbjct: 289 RKELQRLAQYDVLTGLPNRRLLDSRLKKAIAGANGHHHLVAVCFLDLDGFKEVNDSLGHA 348 Query: 426 AGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHGAQVLAEKCIKVVSEP 485 AGD +LQ++ +RL+ R DTLAR GGDEFV+++ L E + + E+ I EP Sbjct: 349 AGDRLLQQMAQRLQHCMRATDTLARFGGDEFVVILDRLNSIDE--CEKILERMIHTAQEP 406 Query: 486 LHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADQAMYAAKGNGRGGYVIA 535 +H+ E + S+G+A+ + + LL+ AD AMY AK G+ YV A Sbjct: 407 VHMDGNEVIVSASIGVAMFQPGVEREQLLKRADTAMYQAKQLGKNKYVFA 456 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 6/182 (3%) Query: 351 LTLAFNGLLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRARTGVALLFL 410 L + F + R K H+ EL A D LT LPNR L + AL A + +A+LF+ Sbjct: 461 LAVTFRDVSDR-KAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFI 519 Query: 411 DLDGFKPINDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYEHG 470 DLD FK INDTLGH +GD +LQ V RL V R GD++ R+GGDEF LL+ L P + Sbjct: 520 DLDDFKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESL--PLQED 577 Query: 471 AQVLAEKCIKVVSEPLHLAQGEYQLGVSVGIAV--CDGSCDADSLLQAADQAMYAAKGNG 528 ++A + ++ ++P + Q + S+GI+ DG DA++LL+ AD AMY+AK +G Sbjct: 578 ISLIANRIMQTFNQPFEIQQKMLTISASMGISRYPFDGR-DAETLLKNADIAMYSAKADG 636 Query: 529 RG 530 + Sbjct: 637 KN 638 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 121/194 (62%), Gaps = 6/194 (3%) Query: 343 VRRDE--VGHLTLAFNGLLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACR 400 V+ DE H A + + + +K ++ L A HDVLTGLPNR +L +R+E A+ ++ R Sbjct: 445 VKDDEGKTTHFVAAMSDI-TPMKQYETTLHRLASHDVLTGLPNRALLQDRLENAIAYSAR 503 Query: 401 ARTGVALLFLDLDGFKPINDTLGHKAGDLVLQEVTRRLRQVARHGDTLARVGGDEFVLLI 460 V ++ +DLD FK +NDT+GH+AGD++L+ ++ RL+ R DT+AR+GGDEFVL++ Sbjct: 504 NGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLGGDEFVLVL 563 Query: 461 TDLGQ-PYEHGAQVLAEKCIKVVSEPLHLAQGEYQLGVSVGIAVC-DGSCDADSLLQAAD 518 + G P + + V+ ++ ++ V +PL + E+ L S+GIAV + D +LL AD Sbjct: 564 PECGDGPSGYSSDVI-QRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHAD 622 Query: 519 QAMYAAKGNGRGGY 532 AMY +K GR + Sbjct: 623 VAMYRSKELGRNNF 636 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,141,790 Number of extensions: 43110 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 30 Length of query: 554 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 466 Effective length of database: 895,685 Effective search space: 417389210 Effective search space used: 417389210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)