BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2787.p
         (564 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981063|ref|YP_001352953.1| single-stranded-DNA-specific ex...   895   0.0  

>gi|152981063|ref|YP_001352953.1| single-stranded-DNA-specific
           exonuclease protein [Janthinobacterium sp. Marseille]
          Length = 549

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/548 (82%), Positives = 498/548 (90%)

Query: 17  LIAEGVHPVLARVYAARGLSTARELASELNALFAPSGLLHIEAAASYLADAIAANKKLVI 76
           ++  GVHPV+AR+YAARGL   +EL SEL AL  P GLL I+ AA++LADAIAA KKLVI
Sbjct: 1   MLQSGVHPVMARLYAARGLLDLKELNSELTALIPPPGLLKIDVAATFLADAIAAKKKLVI 60

Query: 77  VADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEIVELTVREKQPDIIVTV 136
           VADYDCDGATACAV LRGLR +GA VD+IVPNRFEYGYGLTPEIVEL VREK PDIIVTV
Sbjct: 61  VADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEIVELAVREKSPDIIVTV 120

Query: 137 DNGIASIDGVAEAKRRGIDVVVTDHHLPGDTLPQARVIVNPNQPQCGFPSKNLAGVGVMF 196
           DNGIASIDGVAEA RRGIDVVVTDHHLP DTLP ARVIVNPNQP CGFPSKNLAGVGVMF
Sbjct: 121 DNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQPDCGFPSKNLAGVGVMF 180

Query: 197 YVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDANNRILVAQGLKRMRSG 256
           YVLLALRAEMRKRG+FDAQTQP+LD+LLDLVALGTVADVVKLDANNRILVAQGLKRMR+G
Sbjct: 181 YVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAG 240

Query: 257 KMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSLGIECLTTDDEGRAWAI 316
           +MH G+AALFRAAGREARRA+PFDLGFA+GPRLNAAGRL+DMSLGIECLTTDDEGRAWAI
Sbjct: 241 RMHAGVAALFRAAGREARRASPFDLGFALGPRLNAAGRLSDMSLGIECLTTDDEGRAWAI 300

Query: 317 AQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSWHQGVIGIVASRLKDKF 376
           AQQLD INRERR IEA MQDTALLLL+++NP D+ TI+VFDPSWHQGVIGIVASRLKDKF
Sbjct: 301 AQQLDEINRERRTIEADMQDTALLLLENFNPQDKTTISVFDPSWHQGVIGIVASRLKDKF 360

Query: 377 YRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTKFGGHAMAAGLTIHAEA 436
           YRPTITFA   +G+IKGSGRSIAGFHLRDALDLVSKHAP ++ KFGGHAMAAGLTI A+A
Sbjct: 361 YRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPKLIDKFGGHAMAAGLTIRADA 420

Query: 437 FDAFSQAFEAVGRDWLTQNQLERVIETDGALEDAYYSVEFIGLMDQQVWGQGFAPPVFCD 496
            DAF++AFEAVG+DWL QNQLERV+ETDG LE AY++ +FI LM+ QVWGQGFAPP+FCD
Sbjct: 421 LDAFTEAFEAVGKDWLDQNQLERVVETDGPLESAYFTTQFIELMEAQVWGQGFAPPLFCD 480

Query: 497 HFRVLNQRILKDKHLKLQLEKGGRKYDAIWFGHTDALPDHAQVAFRLDANEYNGKTTVQL 556
            FRV+NQRILK++HLKL LEK G  YDAIWFGH D+LP+ A+VA+RLDANE+NG+T VQL
Sbjct: 481 EFRVVNQRILKERHLKLTLEKDGASYDAIWFGHIDSLPNRARVAYRLDANEFNGRTRVQL 540

Query: 557 MVEHAEPA 564
           +VEHAE A
Sbjct: 541 LVEHAEAA 548


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,329,230
Number of extensions: 56346
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 476
Effective length of database: 895,685
Effective search space: 426346060
Effective search space used: 426346060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)