BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2786.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981528|ref|YP_001352954.1| hypothetical protein mma_1264 [...   288   3e-79

>gi|152981528|ref|YP_001352954.1| hypothetical protein mma_1264
           [Janthinobacterium sp. Marseille]
          Length = 348

 Score =  288 bits (738), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/333 (47%), Positives = 207/333 (62%), Gaps = 7/333 (2%)

Query: 16  ELARDLLRQSHAPALAMLLGRGKAAPRLAHDPFSRALPHEHWLAQRFGLPPGAQDSSPAA 75
           E+ARDLLR+   PALA LLGRG      A+D F+RALPHE WLA++ GL     DSSP+A
Sbjct: 16  EMARDLLRELKTPALATLLGRGDLTEHQAYDGFARALPHETWLARQSGLAVNG-DSSPSA 74

Query: 76  ASALMQSLGHAPQTGHWFVLHPAHIHVARDHLVLTDIGQLQLQEEESRRLFAAALPLFTE 135
           A   M + G     G WF+L P H+H+ARDHLVLTD  QLQL EE++R LF    PLF E
Sbjct: 75  ARNAMDAFGLPAADGVWFILQPVHLHIARDHLVLTDTQQLQLSEEDARSLFEVVQPLFAE 134

Query: 136 IGHELVYGDERTWFIRADAWAGLRTSTPSAASGRNIDIWMPEGPGELAWRKLQNEVQMQW 195
            G  L+YGD  TWF+RAD    L+TSTPSAA G NIDIWMP+G  E  WR+LQNEVQM W
Sbjct: 135 TGQALLYGDANTWFLRADELHALQTSTPSAACGHNIDIWMPKGEKERNWRRLQNEVQMHW 194

Query: 196 FAESLNEQREMRGQKAINSIWIWGGANAGISAQAH-YTQSFGL---RGWLRAFG-ADSGQ 250
                N+ REMRG K +NS+W+WGG +   +A A+ + ++F L   R  L   G      
Sbjct: 195 HDHPTNDAREMRGLKPVNSVWLWGGTSNSNAAPANKFEETFSLSSGRNPLMVAGLRHRAV 254

Query: 251 TGAAEVAKGNGQR-LLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVSLRTGTLASL 309
           + AAE+   + Q  LL LD+L   ++A +W  WL  L+ ++  W APLL +++   L   
Sbjct: 255 SSAAELLATHPQHGLLTLDSLIAPSMAGDWSEWLMRLQAMEEIWFAPLLEAIKNNQLDQF 314

Query: 310 KLVLTGADRSVEVAVTRAALRRFWRKPSLSGLS 342
            + L+       +  ++++LR+FWRK SLS L+
Sbjct: 315 SITLSNNIALSTITSSKSSLRKFWRKASLSRLA 347


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 827,385
Number of extensions: 33745
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)