BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2785.p (706 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent... 236 3e-63 gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep ... 187 2e-48 gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [... 70 3e-13 gi|152983232|ref|YP_001352719.1| ATP-dependent DNA helicase [Jan... 69 1e-12 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 219/703 (31%), Positives = 337/703 (47%), Gaps = 91/703 (12%) Query: 26 LNPQQRAAVEHGSQLPPAQQAPLLIVAGAGTGKTNTLAHRVARLILDG-ADPQRILLLSF 84 LNP+Q AAV PAQ P LI+AGAG+GKT L R+A LI G P IL ++F Sbjct: 8 LNPEQLAAVT-----LPAQ--PALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTF 60 Query: 85 SRRAAADLGRRVGQVIAEVLGLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTI 144 + +AA ++ R+ ++ P T W GTFH + RLLR + +L + F I Sbjct: 61 TNKAAKEMMTRLSAMM-------PINTRGM--WIGTFHGLCNRLLRAHYRDAALPQTFQI 111 Query: 145 QDRGDSEDLLGLLRHELGLSATE-QRFPLKATCLSIYSRVVNTRQDLGQVLASHFPWCRE 203 D S+D L +++ L + + +++P + +N +D G + AS + Sbjct: 112 LD---SQDQLSMIKRLLKANNIDDEKYPPRNLMY-----FINGAKDQG-LRASAVEAFDD 162 Query: 204 WERQLGELFSQYVQAKENQHVLDYDDLLLFWAEMLSDTQ-IAQSVGARFDHVLVDEYQDT 262 + R++ EL+ Y Q + + V+D+ +LLL E+LS Q + + +RF H+LVDE+QDT Sbjct: 163 YNRKMVELYEIYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDT 222 Query: 263 NRLQAEILQRIKPDGGGVTAVGDDAQSIYSFRGATVRNILDFPSLFAQPARLLTLEQNYR 322 N LQ L+ + G V AVGDD QSIY+FRGA V N+ F F + L+ LEQNYR Sbjct: 223 NDLQYNWLKLMAGTQGAVFAVGDDDQSIYAFRGANVGNMSAFEREF-KVENLIKLEQNYR 281 Query: 323 STQAILQASNAVIADAPERHFKNLWSDKISSHKPQLVVIPDEAEQARWVANRILAHREEG 382 S IL +N +IA+ +R KNL +D ++ + ++A+W+ + EG Sbjct: 282 SHGHILDTANTLIANNSKRLGKNLHTDAGHGELVRIYEATSDLQEAQWIIEEAKSLIAEG 341 Query: 383 LTLKSQAVLFRTATHSAALELELVRRNIPFVKFGGLKFLESTHIKDLLALLRLAHNPSAR 442 AVL+R+ S +E L IP+ +GG +F E +K +A L+L NP Sbjct: 342 AARSDIAVLYRSNAQSRVIEHALFSSGIPYRVYGGQRFFERAEVKHAIAYLQLMDNPHND 401 Query: 443 MAGFRVLQL-IPGVGPATAKKVLDRMAAASDPTQALQDFQP----PASIAL-QWRDFAQA 496 A RV+ G+G + +++ D AA +L P A +L + +A Sbjct: 402 SAFLRVVNFPTRGIGARSLEQLQD---AAKQYGISLYAAVPYVAGKAGTSLGAFIKLIEA 458 Query: 497 YAFMRGTTTWPADLQAARD--WYLPLLEQRYEDADARLLDIEQLVALAQGYASRE----- 549 F P +Q D + + E AD R+ ++EQ+V+ A + S E Sbjct: 459 ARFETQNLPLPEMVQVVIDASGLITHYQNEKEGAD-RIENLEQVVSAATLFVSEEGFGQD 517 Query: 550 ---------------KLLTE-------------LTLDPPEASSDFSGVPYRD------ED 575 ++T+ + + P A + + D +D Sbjct: 518 APALLGPTSQQMAGPAIVTQDGVEILDADAPLPVVMSPLSAFLSHASLEAGDNQAQAGQD 577 Query: 576 YLTLSTIHSAKGQEWRSVHVLNVVDGCIPSDLATGSEVEIAEERRLLYVAMTRAKEYLHL 635 L L T+HSAKG E+ +V + + +G P + + E + EERRL+YVA+TRAK L++ Sbjct: 578 ALQLMTVHSAKGLEFDAVFITGLEEGLFPHENSQKEEDGVEEERRLMYVAITRAKRRLYI 637 Query: 636 VVPQRFYLTQQTAQGERHVNGIRSRFITPRMLPHFEDSL-WLS 677 Q L G+ N ++SRF +P EDSL WLS Sbjct: 638 SFSQTRML-----HGQMRFN-LKSRFFDE--MP--EDSLKWLS 670 >gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille] Length = 686 Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 138/446 (30%), Positives = 233/446 (52%), Gaps = 42/446 (9%) Query: 26 LNPQQRAAVEHGSQLPPAQQAPLLIVAGAGTGKTNTLAHRVARLILD-GADPQRILLLSF 84 LN QR A+++ P L++AGAG+GKT + ++A LI + G + + I L+F Sbjct: 12 LNAPQRDAIKY-------MDGPCLVLAGAGSGKTRVITTKIASLIEEHGYEARNIAALTF 64 Query: 85 SRRAAADLGRRVGQVIAEVLGLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTI 144 + +AA ++ R+ +++ E QL S TFH++G ++LR A + L++ F+I Sbjct: 65 TNKAALEMQERIAKLLKE------PKQAKQLTVS-TFHSLGVKILRQEAKELGLKDRFSI 117 Query: 145 QDRGDSEDLLGLLRHELGLSATEQRFPLKATCLSIYSR-VVNTRQDLGQVLASHFPWCRE 203 D S+D L++ +L ++ +Q T +S++ +++ L Q E Sbjct: 118 MD---SDDCFSLVQ-DLAVTTDKQLIRRIQTAMSLWKNGLIDPDTALNQAKD-------E 166 Query: 204 WERQLGELFSQYVQAKENQHVLDYDDLLLFWAEML-SDTQIAQSVGARFDHVLVDEYQDT 262 E Q ++ YV +D+DDL+ E+ ++ + R ++LVDEYQDT Sbjct: 167 DEAQAARIYRSYVATLSAYQAVDFDDLIRLPVELFRTNETVRDKWQRRLRYLLVDEYQDT 226 Query: 263 NRLQAEILQRIKPDGGG---VTAVGDDAQSIYSFRGATVRNI----LDFPSLFAQPARLL 315 N Q E+++ + G TAVGDD Q+IY++RGAT+ N+ +DFP L +++ Sbjct: 227 NTCQYELVKLLVTGVGKKPMFTAVGDDDQAIYAWRGATIENLKQLQVDFPDL-----KIV 281 Query: 316 TLEQNYRSTQAILQASNAVIADAPERHFKNLWSDKISSHKPQLVVIPDEAEQARWVANRI 375 LEQNYRS+ ILQA+N+VI++ P+ K+LWS+ +++ + D+ ++A +A + Sbjct: 282 KLEQNYRSSTRILQAANSVISNNPKLFEKSLWSEHGLGDPVKVMGMQDDDQEAEQIAIML 341 Query: 376 LAHR-EEGLTLKSQAVLFRTATHSAALELELVRRNIPFVKFGGLKFLESTHIKDLLALLR 434 AHR E A+L+R + +E L + IP+ GG F + IKD+++ LR Sbjct: 342 SAHRFERRAKFSDYAILYRGNHQARVIEQALRKERIPYTISGGQSFFDRAEIKDIISYLR 401 Query: 435 LAHNPSARMAGFRVLQLIP-GVGPAT 459 L N A R + GVG +T Sbjct: 402 LIANQDDDPAFIRAVTTPKRGVGQST 427 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] Length = 1083 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 114/280 (40%), Gaps = 48/280 (17%) Query: 215 YVQAKENQHVLDYDDLLLFWAEMLSDTQIA----QSVGARFDHVLVDEYQDTNRLQAEIL 270 Y K Q V D+ DL +L++ + A + AR+ HVL+DE+QDTN LQ I+ Sbjct: 365 YQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNPLQWSIV 424 Query: 271 QRIKPDGGGVT------AVGDDAQSIYSFRGATVRNI-LDFPSLFAQPARLLTLEQNYRS 323 Q G T VGD QSIY FR A R L AQ A L Q R+ Sbjct: 425 QAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADFLRTNQTRRN 484 Query: 324 TQAILQASNAVIADAP-----------------------ERHFKNLWSDKISSHKPQLVV 360 + I+ N P E+ K +WS ++ + L Sbjct: 485 ARGIVDVLNESFRANPIYTAQTTLSNEAGAVWQLPLVQQEKSEKVVWSP--ANMRDPLTE 542 Query: 361 IPDEAEQA------RWVANRILAHRE--EGLTLKSQAVLFRTATHSAALELELVRRNIPF 412 +E E A R VA IL RE G +L + TH +A E L IPF Sbjct: 543 PREEEEDARRLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRTHLSAYERALREAGIPF 602 Query: 413 V--KFGGLKFLESTHIKDLLALLRLAHNPSARMAGFRVLQ 450 + GGL LES + DL+ALL P +A VL+ Sbjct: 603 ASDRRGGL--LESLEVADLIALLTFLITPHDNLALAHVLK 640 >gi|152983232|ref|YP_001352719.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 573 Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 157/606 (25%), Positives = 240/606 (39%), Gaps = 83/606 (13%) Query: 46 APLLIVAGAGTGKTNTLAHRVARLILDGADPQ-RILLLSFSRRAAADLGRRVGQVIAEVL 104 APL ++A AG+GKT T R+ + AD + R+ LLSFS A D R+ Q +A+ L Sbjct: 16 APLAVIACAGSGKTATAVRRLVEMRRLLADSRARVALLSFSN-VAVDTFRQSYQTLAQTL 74 Query: 105 GLAPGATPPQLPWSGTFHAIGARLLRDYAAVISLEENFTIQDRGDSEDLLGLL--RHELG 162 GA ++ + I + +LR +A + G L G R Sbjct: 75 --PNGAGRSRVDFETLDGFITSHILRPHAYRTMGSQRAAFLVTGTEPFLSGFTCRRDPFP 132 Query: 163 LSATEQRFPLKATCLSIYSRVVNTRQDLGQVLASHFPWCREWERQLGELFSQYVQAKENQ 222 L T+ + + L Y + L Q AS R+LG Y Sbjct: 133 LPITDMKVGFENNELFFYYDFQGNIKRLDQNAAS------LAVRRLGRT-GAYTH----- 180 Query: 223 HVLDYDDLLLFWA--EMLSDTQIAQSVGARFDHVLVDEYQDTNRLQAEILQRIKPDGGGV 280 DL +WA ++ I +++ R+ HVLVDE QD L IL+ + G V Sbjct: 181 ------DLGRYWAYHTLIDQPLILRALVRRYPHVLVDESQDIGLLHQAILELLMRAGVQV 234 Query: 281 TAVGDDAQSIYSFRGATVRNILDFPSLFAQPARLLTLEQNYRSTQAILQASNAVIA--DA 338 + +GD QSIY F GA + D+ + +L +NYRS +I +N + D Sbjct: 235 SLIGDPNQSIYEFAGANGMFLRDYHR--REEVTAFSLTRNYRSRPSIQAIANHISGRNDE 292 Query: 339 PERHFKNLWSDK--ISSHKPQLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTAT 396 P R I P+L + D VAN G+ +++ A+L R Sbjct: 293 PHRPIDPGTHGVYFIGYSNPELPGLLDAFHAE--VANL-------GMRIENAAILCR--- 340 Query: 397 HSAALELELVRRNIPFVKFGGLKFLESTHIKDLLALLRLAHNPSARMAGFRVLQLIPGVG 456 S+ L +L N P + F+E+ +D+ + A+ R ++ L+ G Sbjct: 341 -SSKLADQLAGVNEPSGRGIVKHFVEAALHRDMHGRFQDAYKAVVR----GIVSLLD--G 393 Query: 457 PATAKKVLDRMAAASDPT--QALQDFQPPASIALQWRDFAQAYAFMRGT-TTWPADLQAA 513 P +A+ S P ++LQD + + +AF R T P+ A Sbjct: 394 PPQGL-----LASLSHPAHDRSLQDLR------------RRLWAFSREVETGLPSSELPA 436 Query: 514 RDWYLPLLEQRYEDADARLLDIEQLVALAQGYASREKLL-TELTLDPPEASSDFSGVPYR 572 D + PL+ R L +I Q + KL T L P A +D + Sbjct: 437 MDSWHPLMLARVRTL---LQEIHQDFGMVPTDNLGHKLARTGLPAGPLGAGADLAA---E 490 Query: 573 DEDYLTLSTIHSAKGQEWRSVHVLNVVDGCIPSDLATGSEVEIAEERRLLYVAMTRAKEY 632 + + T+H KG+ + VL V + G E E+ R+ YVA+TRA Sbjct: 491 RGPRIRVGTVHHVKGESIDA--VLYVATRPHLQAMLDGVETELG---RIGYVAVTRACNL 545 Query: 633 LHLVVP 638 L L VP Sbjct: 546 LWLAVP 551 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,580,535 Number of extensions: 63350 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 5 Length of query: 706 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 616 Effective length of database: 888,291 Effective search space: 547187256 Effective search space used: 547187256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)