BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2784.p
         (421 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981241|ref|YP_001352955.1| ABC-type transport system, invo...   669   0.0  

>gi|152981241|ref|YP_001352955.1| ABC-type transport system,
           involved in lipoprotein release, permease component
           [Janthinobacterium sp. Marseille]
          Length = 421

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/421 (76%), Positives = 372/421 (88%)

Query: 1   LSLIKNLPFEWLVGIRYTRAGKRSGRNSFISFISLISMAGIGLGVAALIVVLSVMNGFQK 60
           +S+IKNL FEWLVGIRYTRAG+RSGRNSFISFISLISMAGI LGVAALI+VLSVMNGFQK
Sbjct: 1   MSIIKNLSFEWLVGIRYTRAGRRSGRNSFISFISLISMAGIALGVAALIIVLSVMNGFQK 60

Query: 61  EVRDRMLSVLPHIEVFDASGSMHDWQAVAKQAFQNPEVLGAAPYVAGQGMMTRDDNLRGV 120
           EVRDRMLSVL HIE+F+  G++ +WQ  A++AF N EV GAAPYV  Q MMTRDD LRGV
Sbjct: 61  EVRDRMLSVLSHIEIFEPQGALPNWQETAREAFTNKEVRGAAPYVDAQAMMTRDDTLRGV 120

Query: 121 MVRGVLPEEEPKVSDVAKQIKQGSFDSLKPGEFNIVIGGELARGMRVGLGDKVTLIVPQG 180
            VRGVLP EEPKVSDVA Q++QGS D+L+PGEFNIV+G ELARGM   LGDKVT+I PQG
Sbjct: 121 AVRGVLPAEEPKVSDVASQVRQGSLDNLRPGEFNIVLGNELARGMGAQLGDKVTMIAPQG 180

Query: 181 QVTPAGVLPRLKQFTVTGIFEAGHYEFDSSLAFIDIKDAETLFRMDAPTGVRLRIRDMLQ 240
           QVTPAGV+PRLKQFTV GIF++GH+E+DS+LAFI I DA T+F++ AP+G+RL+I DM +
Sbjct: 181 QVTPAGVIPRLKQFTVVGIFDSGHFEYDSTLAFIHINDAMTMFKLPAPSGLRLKIADMQR 240

Query: 241 APEVTQQLARTLSGDLYLRDWSQQNSNWFAAVKTEKRMMFIILTLIIAVAAFNLVSTLVM 300
           AP+V   L + +SG++ +RDWS+QN NWFAAV+TEKRMMFIILTLIIAVAAFNLVSTLVM
Sbjct: 241 APQVAMDLTQVISGNVLIRDWSRQNRNWFAAVQTEKRMMFIILTLIIAVAAFNLVSTLVM 300

Query: 301 TVTDKQADIAILRTLGASPGSIMKIFVIQGALVGLIGTAVGVGLGVLVALNIDVLVPAIE 360
           TVTDKQADIAILRTLGASP SIMKIF+IQGALVGLIGTA+GVG GVL+A NIDV+VP IE
Sbjct: 301 TVTDKQADIAILRTLGASPRSIMKIFMIQGALVGLIGTALGVGGGVLIASNIDVIVPFIE 360

Query: 361 HAFHVQFLPKSIYVISELPSELIWSDVYTIGGVAVVLAFLATLYPSWAAARVKPAEALRY 420
              HVQFLPK IY+ISELPS+L W+DV+TIG VAVVL+F+ATLYPSW AARVKPAEALRY
Sbjct: 361 RLLHVQFLPKDIYLISELPSDLRWNDVWTIGSVAVVLSFVATLYPSWWAARVKPAEALRY 420

Query: 421 E 421
           E
Sbjct: 421 E 421


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 922,884
Number of extensions: 36989
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 335
Effective length of database: 903,079
Effective search space: 302531465
Effective search space used: 302531465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)