BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2783.p (236 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 354 3e-99 gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 192 2e-50 gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 168 3e-43 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 144 6e-36 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 121 3e-29 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 354 bits (909), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 171/221 (77%), Positives = 194/221 (87%) Query: 9 QAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPS 68 + VL+ R L KTFTQGKYSV VL +V++D+ GE+VAIVGASGSGKSTLLHLLGGLDTPS Sbjct: 3 EHVLACRNLAKTFTQGKYSVNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPS 62 Query: 69 TGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQA 128 G+V+LL +DFA L E +RG LRN+SLGFVYQFHHLLPEFSALDNVAMPLMIRRV R +A Sbjct: 63 AGSVTLLNQDFATLDEKKRGDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEA 122 Query: 129 QEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTAD 188 E+AR +L +VGL RV+HVPGELSGGERQRVALARALVTQPACVLADEPTGNLDR TA Sbjct: 123 HEKARAILARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAH 182 Query: 189 RTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSDQGL 229 +TF+LM+ELSRTLGTAF+IVTHD+ELA C RI+RLSD GL Sbjct: 183 KTFDLMLELSRTLGTAFIIVTHDVELATHCDRIMRLSDDGL 223 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 192 bits (487), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 102/198 (51%), Positives = 131/198 (66%), Gaps = 2/198 (1%) Query: 28 VKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSLLGKDFAGLGESER 87 + +L VD V G+ +AIVGASGSGKSTLL LL GLDTPS GTV L G D L E R Sbjct: 27 LTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGTDIFALDEDGR 86 Query: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQAREMLEKVGLAQRVSH 147 LR LGFV+Q LL +AL+NV +PL +R +A+E+A ML +VGL+ R+ H Sbjct: 87 AGLRKSKLGFVFQSFQLLGHLNALENVMLPLELR--GDGKAKEKAEAMLARVGLSTRLKH 144 Query: 148 VPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 P LSGGE+QRVALARA V++P + ADEPTG+LD +T + +LM EL+R G+ V+ Sbjct: 145 YPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGEAVIQLMFELNRERGSTLVL 204 Query: 208 VTHDIELAGRCGRILRLS 225 VTHD +A C R + +S Sbjct: 205 VTHDPSIAALCKRTITIS 222 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 168 bits (425), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 135/212 (63%), Gaps = 1/212 (0%) Query: 15 RGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSL 74 RG+ KT+ G V+VL +D+ +Y GE VAI+GASGSGKSTL+++LG LD P+TG+ Sbjct: 22 RGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGSYHF 81 Query: 75 LGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQARE 134 +G+D +G E LR GFV+Q ++L+ SA++NV +P M + + +A+ Sbjct: 82 MGRDVSGFDRDELAMLRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAERHARAQA 141 Query: 135 MLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELM 194 +L ++GLA+R H P +LSGG++QRV+++RAL+ +LADEPTG LD + +L+ Sbjct: 142 LLAELGLAERSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVMKLL 201 Query: 195 IELSRTLGTAFVIVTHDIELAGRCGRILRLSD 226 +LS G +++TH E+A R++ + D Sbjct: 202 ADLSAR-GHTVLLITHAKEVADHAQRLIEIKD 232 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 144 bits (362), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 10/225 (4%) Query: 17 LGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSLLG 76 + K +TQ +V L+++ + V GE V + G SG+GKSTLL L+ ++ PS G+V + G Sbjct: 7 VSKKYTQ---NVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVIVSG 63 Query: 77 KDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQAREML 136 D + + S LR ++LG ++Q LL + S L NV +PL++ R A+ +AR L Sbjct: 64 HDISRIKTSGLPYLR-RNLGLIFQQQRLLADRSVLANVMLPLIVCGASRPDAERRARAAL 122 Query: 137 EKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELMIE 196 +KVGL S P LSGGE+QRVA+ARA+V +P +LADEPT NLDR+ A++ + ++ Sbjct: 123 DKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLD-ALK 181 Query: 197 LSRTLGTAFVIVTHDIELAGRCGRIL-----RLSDQGLRVASQRP 236 ++G +I THD + R++ R+ + R A+Q P Sbjct: 182 AFHSVGVTCLISTHDEQFLDTATRVIYLDHGRIIESWRRTATQEP 226 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 10/202 (4%) Query: 10 AVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPST 69 A+L R L + F V+ N+ + + GE ++G SG GK+TLL ++ G D P Sbjct: 2 ALLEIRNLTRRFGDNT----VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDA 57 Query: 70 GTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQ 129 G + L G D G+ +R + V+Q + L P + N+A PL + + + Q Sbjct: 58 GQILLDGVDLTGVPPEQR------PVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQ 111 Query: 130 EQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADR 189 ++ E LE V L + P ELSGG+RQRV++ARALVT+P +L DEP LD ++ Sbjct: 112 KKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQ 171 Query: 190 TFELMIELSRTLGTAFVIVTHD 211 +I L + +G F+ VTHD Sbjct: 172 MQIELINLQKEVGITFIYVTHD 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 528,458 Number of extensions: 22394 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 64 Length of query: 236 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 156 Effective length of database: 925,261 Effective search space: 144340716 Effective search space used: 144340716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)