BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2782.p
         (390 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031 [...    95   8e-21
gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate desucc...    86   3e-18

>gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031
           [Janthinobacterium sp. Marseille]
          Length = 410

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 143/314 (45%), Gaps = 27/314 (8%)

Query: 71  IVLSGHTDVVPVDGQKWDTDPFKITEKDGSLYGRGTCDMKGFIAT---ALALVPEFLTMP 127
           + L+ H DVVP  G  W  DP+  T +DG + GRG    K   AT   AL  + E L++P
Sbjct: 91  VALNAHGDVVP-PGAGWSVDPYSATVRDGWMIGRGAAVSKSDFATYAFALRALKE-LSIP 148

Query: 128 RVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFACK 187
               + L  +YDEE G +  P  L   +++G+      +    S NV  AH G      K
Sbjct: 149 LRGQVELHLTYDEETGGLAGPGWL---LQQGLSKPDYAICAGFSYNVTTAHNGCLHLEIK 205

Query: 188 VHGKSAHSSLTPHGCNAIEHAARLICAIRDFADGYKANGPYDQAFDVPFSTMTTNQIRGG 247
           VHG SAH++    G +A+E A +L+ A+ D+ +  +           P  ++    I GG
Sbjct: 206 VHGTSAHAARPDTGHDALEAATKLLSALYDYRNSLQQRTSAISGITSP--SLVVGMINGG 263

Query: 248 IAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQYIAQVL--LPRMRAEFPDARVEIDNFA 305
           I  N +P+      + R +P     +++A++   I   L  +P +R+E    R+      
Sbjct: 264 INTNVVPDEVTLRLDRRIIPEEIPEEVEAELRAVIENTLRGMPGIRSEV--KRI----LL 317

Query: 306 GSPALEAAEQAAITELV----RALTGDRETR-KVAYGTEAGLFQQIGIPTIVCGPGDI-- 358
            SP     + A + ++V     A  G+  T   V   ++A L+ + G+ T++ G G    
Sbjct: 318 ASPFKPVGDAARLRDIVCTEASAALGEAVTPIGVPLYSDARLYAEAGVATVMYGAGPRTL 377

Query: 359 --GNAHKPNEFVAL 370
              N H+ +E V L
Sbjct: 378 LEANGHRADEKVPL 391


>gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate
           desuccinylase [Janthinobacterium sp. Marseille]
          Length = 375

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 149/340 (43%), Gaps = 38/340 (11%)

Query: 65  GSTEGGIVLSGHTDVVPVDG-QKWDTDPFKITEKDGSLYGRGTCDMKGFIATALALVPEF 123
           G+T+  +V +GHTDVVP    ++W + PF  T+++G LYGRG  DMK  IA  +    EF
Sbjct: 55  GTTQPLLVFAGHTDVVPTGPLEQWTSPPFVPTQREGKLYGRGAADMKTSIAAMVVAAEEF 114

Query: 124 LTMPRVKPIH------LAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVV-- 175
           +   +  P H      L  S +E     G  ++   +  RG ++D CVVGEPTS +V+  
Sbjct: 115 V---QAHPAHKGSIGFLITSDEEGPATDGTVIVCNALKARGEQLDYCVVGEPTSSDVLGD 171

Query: 176 ---VAHKGINVFACKVHGKSAHSSLTPHGCNAIEHAARLICAI--RDFADGYKANGPYDQ 230
                 +G       V G   H +      N I   A  +  +    + DG +       
Sbjct: 172 TIKNGRRGSMSGKLTVKGIQGHIAYPQLARNPIHQCAPALAELVAEKWDDGNE------- 224

Query: 231 AFDVPFSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVGDIQAQIDQYIAQVLLPRM 290
            + +P S   +N   G  A N IP      + FR     +V  +Q ++       +L + 
Sbjct: 225 -YYLPTSWQVSNIHGGAGASNVIPGNVVIDFNFRFCTASTVDGLQKRV-----HAILDKH 278

Query: 291 RAEFPDARVEIDNFAGSPAL--EAAEQAAITELVRALTGDRETRKVAYGTEAGLF-QQIG 347
             E+ D +  I   +G P L  +     A+++ +++ TG         GT  G F  QI 
Sbjct: 279 GLEY-DLKWSI---SGHPFLTPKGTLSDAMSDAIKSETGVTTELSTTGGTSDGRFIAQIC 334

Query: 348 IPTIVCGPGDIGNAHKPNEFVALAQMERCEQFLRKLGKSL 387
              +  GP + G+ HK +E + +  ++  +   R+  ++L
Sbjct: 335 PQVVEFGPPN-GSIHKIDEHIEVRFIDPLKNIYRRTMENL 373


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 913,775
Number of extensions: 37832
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 305
Effective length of database: 906,776
Effective search space: 276566680
Effective search space used: 276566680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)