BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2781.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980751|ref|YP_001352957.1| Mg-dependent DNase [Janthinobac...   372   e-104
gi|152980576|ref|YP_001353672.1| Mg-dependent DNase [Janthinobac...   108   5e-25

>gi|152980751|ref|YP_001352957.1| Mg-dependent DNase
           [Janthinobacterium sp. Marseille]
          Length = 270

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/263 (69%), Positives = 208/263 (79%)

Query: 1   MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60
           MWVDTHCHLDA EF     AVA+ AAQ  V  IVIPA+AR NF  VA+LAR+ GN  YAL
Sbjct: 6   MWVDTHCHLDAAEFAGVEDAVAEGAAQKQVSMIVIPAVARDNFVTVAELARKHGNCSYAL 65

Query: 61  GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120
           GIHP+YVP A+ +DL +LRE +AAA++D  FV +GEIGLDFFVP L    +REKQEFF+A
Sbjct: 66  GIHPIYVPRAQESDLALLRETVAAAMNDTRFVALGEIGLDFFVPMLTTPEMREKQEFFYA 125

Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVPGGIAHAFNGSHQQAENFVELGLHLGF 180
           EQLK+ARDFDLPVLLHVRRSQD ILKYLRRI+V GGIAHAFNGS QQAE F+ LG  LGF
Sbjct: 126 EQLKIARDFDLPVLLHVRRSQDSILKYLRRIKVVGGIAHAFNGSFQQAETFISLGFKLGF 185

Query: 181 GGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELRQ 240
           GGAMTF R+LQIRR+A+ L L SIVLETDAPDISPAWLHP  N+P+++P IG VLAELR 
Sbjct: 186 GGAMTFTRALQIRRMASTLALESIVLETDAPDISPAWLHPQRNSPEELPNIGQVLAELRG 245

Query: 241 LSLTEVATTTTANAQVALPRLAC 263
           L L  VA  TTANA   +PRL  
Sbjct: 246 LPLDAVARQTTANALAVMPRLGS 268


>gi|152980576|ref|YP_001353672.1| Mg-dependent DNase
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  108 bits (269), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 131/259 (50%), Gaps = 15/259 (5%)

Query: 1   MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60
           M++D+HCH++  E   R   +  + A+  V   +  ++   +F  V +LA    +   ++
Sbjct: 1   MFIDSHCHINFPELAARMPEILGKMAENKVSHALCVSVDLPDFPSVLELAERYPHIYASV 60

Query: 61  GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120
           G+HP Y  T EP+  D++R +     + P  V IGE GLD++   L+ D   E Q   F 
Sbjct: 61  GVHPDYEDTPEPSVEDLVRLS-----EHPKIVAIGETGLDYY--RLEGD--LEWQRERFR 111

Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRR------IRVPGGIAHAFNGSHQQAENFVEL 174
             ++ +R    P+++H R + +  ++ +R            G+ H F  S + A   +++
Sbjct: 112 RHIRASRATGKPLIIHTRAASEDTIRIMREEGAGTDAGGAAGVMHCFTESLEVARAAMDM 171

Query: 175 GLHLGFGGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAV 234
           G ++ F G +TF  +  ++ +A E+PL  +++ETD+P ++P       N P  +  +G  
Sbjct: 172 GFYISFSGIVTFKSAKDLQAVAREVPLEQMLIETDSPYLAPVPHRGKVNEPGLVRHVGEY 231

Query: 235 LAELRQLSLTEVATTTTAN 253
           LA L+ + L ++A  T+ N
Sbjct: 232 LATLKGVPLEQLAQQTSDN 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 581,548
Number of extensions: 23701
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)