BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2780.p
         (829 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981628|ref|YP_001352958.1| DNA internalization-related com...   894   0.0  

>gi|152981628|ref|YP_001352958.1| DNA internalization-related
           competence protein ComEC/Rec2 [Janthinobacterium sp.
           Marseille]
          Length = 804

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/831 (57%), Positives = 585/831 (70%), Gaps = 31/831 (3%)

Query: 1   MRALIIGFAIGVGLLQVQGQLPGLEWYGVGLVLAA---LLAFTAWKFWQPFLRVPVLLTC 57
           MR+ IIGF IG   LQ +  LP  +++ + L+L A   LLA         F + P+L   
Sbjct: 1   MRSTIIGFVIGAAWLQTRATLP--QYFSILLLLIAACVLLALARHSILHKF-KTPLLALF 57

Query: 58  GAWLGFLWAASFALYYLDQELPSAWEGRDITVIGTVADLPVHNDQGVRFRFDVEQVVLQS 117
           GA LGF+WAA FA YYL  ELP   EG+DITVIGTVA LP + ++GVRF F VE+V+   
Sbjct: 58  GAVLGFVWAALFAQYYLSHELPKELEGKDITVIGTVASLPNYFERGVRFNFAVEEVLPLD 117

Query: 118 GIKPPVPPRLALSWYGNQRYQQPTEDGEQASPAPLAVPDLRPGERWRLQVRLKRPHGNAN 177
           G+ P +P +LALSWY +   Q     GE           +  GERW+L +RL+RPHGNAN
Sbjct: 118 GVAPAIPRKLALSWYSSFNPQDRQGIGE-----------IHAGERWQLTLRLRRPHGNAN 166

Query: 178 PDGFDYELSLLQDDVRATGYVVGRPAAASAPATALNRRIDTFVWTPSHVIDSARGWLRDR 237
           P GFDYE  LL+ ++RATGYV  RP      A   N R+  FV++ ++V++ +RGWLR R
Sbjct: 167 PYGFDYERWLLEQNIRATGYV--RP---DQKAEFKNERLAPFVFSFNNVVERSRGWLRAR 221

Query: 238 IYTALPDAPYAGVIAALVMGDQRGIRQDDWTVFNRTGIGHLMAISGLHITMLAALCGGLA 297
           I   L   PYAGVI ALV+GDQR I Q DW VFNRTG+ HL++ISGLHITM+AA+  GL 
Sbjct: 222 IEQTLQGQPYAGVIVALVVGDQRAISQPDWAVFNRTGVSHLISISGLHITMIAAMFAGLV 281

Query: 298 GWLWRRSFFTGAQLPLRLPAQKVAVIAGMVTALLYVLLAGFGVPAQRTLYMLIVVGIAFW 357
             LWRRSFFT A LPLRLPAQK A +AG + AL+YVLLAG GVPAQRTLYML VV +A W
Sbjct: 282 FALWRRSFFTSASLPLRLPAQKAAALAGGLAALVYVLLAGSGVPAQRTLYMLTVVALALW 341

Query: 358 RGRIVRVSVVQCLALALVLLLDPWAVLWPGFWLSFGAVALLLYGSVGRMQPPRAMAAAAA 417
            GR+  VS V CLAL +V+LLDPW+VL PGFWLSFGAVA++LY SVGR + P      A 
Sbjct: 342 YGRLTSVSYVLCLALGVVVLLDPWSVLGPGFWLSFGAVAVILYVSVGRARAP----VKAG 397

Query: 418 RKHWWPALLQRIKEASHAQYVVTLGLVPLTMLLFGQYSLVSPIANAIAIPLVSLVITPLA 477
           +  W  AL    + A   QY VT+GLVPLT+L+FGQ SLVSP+ANAIAIPLVS ++TPLA
Sbjct: 398 QSRWRVAL----RNAGMTQYAVTIGLVPLTVLMFGQASLVSPLANAIAIPLVSFLVTPLA 453

Query: 478 LVGSILPTVLAQFVLQVPHQLLSWLADFLQTLNAMPWAVWQTPLPSWWMFALALGGTLLV 537
           LVGS+LP  L+ + LQV H L+  LA  L  +++   AVW  P+PSWWMFALAL GT+ +
Sbjct: 454 LVGSVLPAPLSGWCLQVAHWLVQELAQLLTWMSSWQLAVWTVPIPSWWMFALALFGTVWM 513

Query: 538 LAPRGWPVRWLGLFGWLPLLLNTPLGPAEGTMRVTAFDVGQGMAVLVETPGHRLLYDTGP 597
           LAPRGWP R+LGLF WLPLLLNT   P  G M VTAFDVGQGMA+L+ET  HRLLYDTGP
Sbjct: 514 LAPRGWPARYLGLFAWLPLLLNTATHPRAGEMWVTAFDVGQGMALLIETEKHRLLYDTGP 573

Query: 598 YYTAESDGATRVILPYLRAHGIDHLDRVVISHNDNDHSGGALSLFKSLSVDSVYSSLSPD 657
            Y+ ESDG  RVILPYL A GI+ LD ++ISH+DNDHSGGALS+ K ++V  + +SL  D
Sbjct: 574 VYSPESDGGNRVILPYLHARGINKLDGMMISHSDNDHSGGALSILKEVNVAQLSTSLPLD 633

Query: 658 SRILRSAPVNTRCQAGQTWNWDGIGFTVLHPAAASYDSDKWRPNARSCVLKVQIGRQSVL 717
             I+ S   + RC AGQ W WDG+ F VLHP    Y+S KW+PNARSC LK+ +G   +L
Sbjct: 634 HPIVDSGSSHQRCAAGQAWEWDGVRFEVLHPPQDLYESTKWKPNARSCTLKITLGEYGIL 693

Query: 718 LTGDIEATQEDELVNGPLADRLPSTVLLAPHHGSGTSSTEPFLRAVRPELVVFQVGYRNR 777
           L GDIE  QE  LV     + L + +LLAPHHGSGTSSTE FLRAV P+  +FQVGYRNR
Sbjct: 694 LPGDIEKRQEAALVASD-PESLRANILLAPHHGSGTSSTEAFLRAVNPQFAIFQVGYRNR 752

Query: 778 FNHPKPEVYERYGRLGIRRLRTDESGALTMTLGDQLQVEQYRKQHARYWYG 828
           + HPK EVY+RYG LGI RLR+D++GA+++  G Q+QV  YR +HARYWYG
Sbjct: 753 YRHPKQEVYDRYGALGISRLRSDDTGAISLRFGSQMQVSDYRSEHARYWYG 803


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,823,837
Number of extensions: 73087
Number of successful extensions: 320
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 1
Length of query: 829
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 738
Effective length of database: 884,594
Effective search space: 652830372
Effective search space used: 652830372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 134 (56.2 bits)