BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2778.p
         (550 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980311|ref|YP_001352959.1| CTP synthetase [Janthinobacteri...   990   0.0  

>gi|152980311|ref|YP_001352959.1| CTP synthetase [Janthinobacterium
           sp. Marseille]
          Length = 547

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/550 (88%), Positives = 515/550 (93%), Gaps = 5/550 (0%)

Query: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF 60
           MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSP QHGEVF
Sbjct: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPFQHGEVF 60

Query: 61  VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN 120
           VT+DGAETDLDLGHYERFI+AKM+KVNNFTTGQ+YESVIRKERRGEYLGKTVQVIPHITN
Sbjct: 61  VTEDGAETDLDLGHYERFITAKMRKVNNFTTGQIYESVIRKERRGEYLGKTVQVIPHITN 120

Query: 121 EIQEFIHRGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA 180
           EIQ++IHRGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLR+GRNA AFVHLTLVP+LA
Sbjct: 121 EIQDYIHRGAEGFDVALVEIGGTVGDIESLPFLEAARQLSLRAGRNAAAFVHLTLVPYLA 180

Query: 181 SAGELKTKPTQHSVQKLREIGISPDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA 240
           SAGELKTKPTQHSVQKLREIGISPDALLCRADR+IPDDER KISLFSNV  DAVISVWDA
Sbjct: 181 SAGELKTKPTQHSVQKLREIGISPDALLCRADRQIPDDERAKISLFSNVQEDAVISVWDA 240

Query: 241 DTIYKIPQMLHDQGLDTIICEKLGLSPKPADLSMWDKLIDAQNNPSHEVTIGMVGKYVDL 300
           DTIYKIPQMLHDQGLD I+CEKL LSPKPADLSMW KL+ +  NP   VTIGMVGKYVDL
Sbjct: 241 DTIYKIPQMLHDQGLDRIVCEKLALSPKPADLSMWTKLVHSLENPKDSVTIGMVGKYVDL 300

Query: 301 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDTLRKYDAILVPGGFGKRGVEGK 360
           TESYKSLTEALRHAGIHT SRVNIEYLDSEEIE  G   L KYDAILVPGGFGKRGVEGK
Sbjct: 301 TESYKSLTEALRHAGIHTESRVNIEYLDSEEIENTGPQCLAKYDAILVPGGFGKRGVEGK 360

Query: 361 IAAARYARENKVPYLGICLGMQVALLEYARNKAGLTKANSTEFDPDTEQPVVALIDEWQN 420
           IA+AR+ARE+K+PYLGICLGMQVAL+EYAR+ AGLTKANSTEFD DTEQPVVALI+EWQN
Sbjct: 361 IASARFARESKIPYLGICLGMQVALIEYARDVAGLTKANSTEFDADTEQPVVALINEWQN 420

Query: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYLGRVE 480
           HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYG  VTERHRHRYEANN YLGRVE
Sbjct: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGSEVTERHRHRYEANNHYLGRVE 480

Query: 481 EAGMIVSARTPSEDLCEIMELPRTGENAHPFYIGVQYHPEFKSTPRDGHPLFISYIRAAL 540
           +AG+IVSARTP+E LCEIMELPRT    HP+Y+GVQYHPEFKSTPRDGHPLFIS+I+AAL
Sbjct: 481 DAGLIVSARTPTESLCEIMELPRT---VHPWYVGVQYHPEFKSTPRDGHPLFISFIKAAL 537

Query: 541 AHHAASKGQA 550
           AH  A  GQA
Sbjct: 538 AHKHA--GQA 545


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,312,699
Number of extensions: 57327
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 462
Effective length of database: 895,685
Effective search space: 413806470
Effective search space used: 413806470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)