BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2777.p
         (427 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979934|ref|YP_001352960.1| phosphopyruvate hydratase [Jant...   796   0.0  

>gi|152979934|ref|YP_001352960.1| phosphopyruvate hydratase
           [Janthinobacterium sp. Marseille]
          Length = 427

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/427 (89%), Positives = 406/427 (95%)

Query: 1   MSAIVDIIGREVIDSRGNPTVECDVLLESGVLGRAAVPSGASTGSREAIELRDGDKSRYF 60
           MSAIVDIIGREVIDSRGNPTVECDVLLESGV+GRAAVPSGASTGSREAIELRDGDKSRYF
Sbjct: 1   MSAIVDIIGREVIDSRGNPTVECDVLLESGVMGRAAVPSGASTGSREAIELRDGDKSRYF 60

Query: 61  GKGVLQACENINTEISEAIMGLDANEQAFLDRTLIDLDGTENKSRLGANAMLAVSMAVAK 120
           GKGVL+ACE+INTEISEAIMGLDANEQAFLDRTLIDLDGTENK+RLGANA LAVSMAVAK
Sbjct: 61  GKGVLKACEHINTEISEAIMGLDANEQAFLDRTLIDLDGTENKARLGANATLAVSMAVAK 120

Query: 121 AAAEESGLPLYRYFGGSGSMQMPVPMMNVINGGAHADNNLDIQEFMIIPVGAPSFREALR 180
           AAAEESGLPLYRYFGGSG+MQMPVPMMNVINGGAHA+NNLD+QEFMIIPVGAPSFREA+R
Sbjct: 121 AAAEESGLPLYRYFGGSGAMQMPVPMMNVINGGAHANNNLDLQEFMIIPVGAPSFREAIR 180

Query: 181 YGAEVFHTLKKILHDRGLATSVGDEGGFAPNVSSHEEAIKLIIEAIEKAGYEPGTQVALG 240
           YGAEVFHTLKKI++D+GL TSVGDEGGFAP+V +HE AIKLI++AIE+AGYEPGTQ+ALG
Sbjct: 181 YGAEVFHTLKKIINDKGLPTSVGDEGGFAPSVENHEAAIKLILQAIEQAGYEPGTQIALG 240

Query: 241 LDCAASEYYKDGNYHLAGENMVLTPAQKTGLLASWCDKYPIISIEDGMAENDWAGWKLLT 300
           LDCAASE+YKDG YHLAGE M L+ A  T LL +WCDKYPIISIEDGMAENDW GW  LT
Sbjct: 241 LDCAASEFYKDGKYHLAGEGMTLSSADFTNLLGTWCDKYPIISIEDGMAENDWDGWATLT 300

Query: 301 ETLGKKVQLVGDDLFVTNTKILKEGIDKGIANSILIKINQIGTLTETFAAIEMAKRAGYT 360
             LGKKVQLVGDDLFVTNTKIL+EGI K IANSILIKINQIGTLTETFAAIEMAKRAGYT
Sbjct: 301 NALGKKVQLVGDDLFVTNTKILREGIQKNIANSILIKINQIGTLTETFAAIEMAKRAGYT 360

Query: 361 AVISHRSGETEDSTIADIAVGMNALQIKTGSMSRSDRMAKYNQLLRIEEDLGDIASYPGR 420
           AVISHRSGETEDSTIADIAVG N+LQIKTGSMSRSDRMAKYNQLLRIEEDLGDIASYPGR
Sbjct: 361 AVISHRSGETEDSTIADIAVGTNSLQIKTGSMSRSDRMAKYNQLLRIEEDLGDIASYPGR 420

Query: 421 AAFYNLK 427
            AFYNLK
Sbjct: 421 GAFYNLK 427


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 946,725
Number of extensions: 38688
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 341
Effective length of database: 903,079
Effective search space: 307949939
Effective search space used: 307949939
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)