BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2775.p
         (202 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981913|ref|YP_001351737.1| nicotinamide mononucleotide tra...   225   1e-60

>gi|152981913|ref|YP_001351737.1| nicotinamide mononucleotide
           transporter pnuC [Janthinobacterium sp. Marseille]
          Length = 201

 Score =  225 bits (574), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 148/199 (74%), Gaps = 1/199 (0%)

Query: 3   LDTPLTWLGLT-TTPLELVSFVLAIVTVWLNIGQNHWAWLFSILSSLLYAAVFADARLYG 61
           ++   T  GL  T+ LEL SF LA+  V LNI Q+ WAWLFSILS+ +YA VF D+R+YG
Sbjct: 1   MNDTFTLFGLVDTSALELASFALALCMVILNIRQSPWAWLFSILSAAMYAVVFYDSRIYG 60

Query: 62  DAGLQFVFVAVSVWGWYQWLRGGEQHRPLRVSRLAPGGWAYMVGAWLAGWWLLSWFLQRY 121
           D  LQF F+AVS+WGWYQWL GG  H+ ++VSR++P  + Y   AWL G+  ++ FL+ +
Sbjct: 61  DMSLQFFFIAVSLWGWYQWLFGGATHQGVQVSRMSPLAYLYSGLAWLIGFIAIAAFLRLF 120

Query: 122 TDTDVPHMDGFLTAGSLVGQFLLSRKKLENWLVWIAVDVLYVGLYVYKHLTLTAVLYALF 181
           TDTDVPH+D FLTAGSLVGQ LLSRKKLENW VWI +D++Y+GLY++K L LTA L+A+F
Sbjct: 121 TDTDVPHIDAFLTAGSLVGQLLLSRKKLENWYVWIVIDLIYIGLYLHKDLYLTAFLFAIF 180

Query: 182 VLMAAAGWRSWRRTKGDAG 200
           V++A  G R+W ++    G
Sbjct: 181 VVLAVVGLRTWEKSLHTQG 199


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 457,671
Number of extensions: 17483
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 123
Effective length of database: 928,958
Effective search space: 114261834
Effective search space used: 114261834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)