BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2774.p (537 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 493 e-140 gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinoba... 124 1e-29 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 122 5e-29 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 121 1e-28 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 114 1e-26 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 493 bits (1268), Expect = e-140, Method: Compositional matrix adjust. Identities = 269/524 (51%), Positives = 371/524 (70%), Gaps = 12/524 (2%) Query: 10 PVEIAREAFQRLGARRIAPTPDAYRIAYEEIQGDLPGVSAESVMDNFATRLSRQPGENGL 69 P EIAREAF++L RRIAPTPDAYR Y+EI G + E ++ FA LS P + Sbjct: 12 PAEIAREAFRQLAVRRIAPTPDAYRAIYDEIAGYAVQPTPEEILAEFAASLSTAPDGVAI 71 Query: 70 LGTRLVRARENGDWSSFER---QLIEFAEANW--QSRPAAPPAPVVPHGELVPIDLERQF 124 +G L A W F + QL++ + Q+ +A APVV + + + + Sbjct: 72 IGKTLQEAATTSYWPDFSKGLAQLVKHYQTQLAIQANSSAAVAPVVQNTQSLSL------ 125 Query: 125 IRDSKKEKMLREMLVRVLVFNLPSLLSTAPELANESRNSGQELKMAFSEQSMNDIIARVK 184 D + +LR++L R L + SLL AP+LA E+ G+ +K A +E S+N++ ++K Sbjct: 126 -VDDPQPALLRDLLTRTLTLAVASLLQGAPDLAAEAEALGRSVKDANTEASLNEVSVKLK 184 Query: 185 QLSFQIELKTDDMAQQQELLMRLFQLLLENINGLLEQGSWLSSQIETVQSLIAGPLSSTS 244 QL F+IELK+ DMAQQ E+L+RLF+LLLENI GLLE SW+ QIE V++LI+ P++ + Sbjct: 185 QLCFKIELKSGDMAQQHEMLLRLFRLLLENIGGLLEHDSWMHGQIEAVRNLISAPINDVA 244 Query: 245 LADATKNLKEVIYKQGLLKNTLSEEKVVVKNMMLTFVDRLSAMVSTTDNYQRTIRGFSQQ 304 L + ++LKEVIYKQG LKN++++ KV VKNM+ TF+DRL+ + +TT NY + I +S++ Sbjct: 245 LNEVMRSLKEVIYKQGTLKNSINDAKVSVKNMVNTFIDRLADIANTTGNYHQQIDRYSKE 304 Query: 305 ISQAGNIADLNSVLSEIMTETQKAQEEATRSRDAMEDARQEVEKAEDRIHALEQQLLQMG 364 I+Q +I L+ +L E+ ET+ AQ EA RSRD + AR++VE AE RIH LE QL QM Sbjct: 305 ITQTADINKLSKILDEVKRETRIAQTEALRSRDIVLAARKDVEDAEARIHNLELQLEQMS 364 Query: 365 ELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEV 424 ELVREDQLTGSLNRRG+D+ L+REIA A RR +PLC+A+LDLDDFK+IND +GH GDE Sbjct: 365 ELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKINDKYGHMAGDEA 424 Query: 425 LVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQR 484 L+HLV+VI++TLR +DVIARFGGEEF++++P+T ++A+ ITR+QRELTK+IFMH R Sbjct: 425 LIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQRELTKQIFMHNHTR 484 Query: 485 LLITFSAGLALYYPGESQAELLKRADVALYKAKNAGKNRIVFAE 528 LL+TFSAG+AL E QA ++KRAD+ALY+AK AGKNR++ A+ Sbjct: 485 LLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRVIPAQ 528 >gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 300 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 100/175 (57%), Gaps = 4/175 (2%) Query: 354 HALEQQLLQMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRIN 413 H LE +L ++ + DQLTG NRR ++ L + LR P V + DLD+ K+IN Sbjct: 129 HILEGKLRELSD---TDQLTGLFNRRKLEHDLTLHYESLLRYSVPTSVFIFDLDNLKKIN 185 Query: 414 DTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQREL 473 DT GH GDE++ + + R +R+ D RFGG+EFV+ +P TE + A+Q+ R+ Sbjct: 186 DTKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIALPNTELEQAMQLAERLHDRF 245 Query: 474 TKRIFMHESQRLLITFSAGLALYYPGE-SQAELLKRADVALYKAKNAGKNRIVFA 527 K + ++T S G+ P + S + LKRAD ALY+AK+ GK+RIV A Sbjct: 246 RKELSRFSVGDTVVTASIGVTSMVPEDRSYEDTLKRADRALYEAKSMGKDRIVSA 300 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 99/164 (60%), Gaps = 2/164 (1%) Query: 366 LVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVL 425 L + D LTG NRR +D L + IA A + V LDLD FK +ND+ GHA GD +L Sbjct: 295 LAQYDVLTGLPNRRLLDSRLKKAIAGANGHHHLVAVCFLDLDGFKEVNDSLGHAAGDRLL 354 Query: 426 VHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQ-IITRVQRELTKRIFMHESQR 484 + Q ++ +R D +ARFGG+EFVV++ D + I+ R+ + + M + Sbjct: 355 QQMAQRLQHCMRATDTLARFGGDEFVVILDRLNSIDECEKILERMIHTAQEPVHM-DGNE 413 Query: 485 LLITFSAGLALYYPGESQAELLKRADVALYKAKNAGKNRIVFAE 528 ++++ S G+A++ PG + +LLKRAD A+Y+AK GKN+ VFA+ Sbjct: 414 VIVSASIGVAMFQPGVEREQLLKRADTAMYQAKQLGKNKYVFAD 457 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 7/161 (4%) Query: 368 REDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVH 427 R D L G NRR + +L+++ A PLC+A++DLD FKR+ND GH GDEVL Sbjct: 241 RRDVLLGCFNRRYIVAALEQQKRMADESGAPLCLAVIDLDHFKRVNDEAGHLGGDEVLRT 300 Query: 428 LVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQRLL- 486 +V +R+ D+ R+GGEEF++++PET A+ I R++ ++ + H+ Q L Sbjct: 301 FARVAESNVRKHDIFGRYGGEEFLLVLPETPLSAALNISERIRTQIEQ----HDWQGKLR 356 Query: 487 --ITFSAGLALYYPGESQAELLKRADVALYKAKNAGKNRIV 525 +T S GL Y GES +L R D A+Y AK +G+N++V Sbjct: 357 NRVTVSIGLTQYIAGESVLDLFSRTDTAMYMAKQSGRNQVV 397 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 2/197 (1%) Query: 330 EEATRSRDAMEDARQEVEK-AEDRIHALEQQLLQMGELVREDQLTGSLNRRGMDESLDRE 388 E+ +S + + A+ ++E+ +R L + + L R D LTG+ NRR +E E Sbjct: 407 EQKLQSNELLRQAKDDLERIVSERTAELRKARDEAERLSRVDALTGAFNRRYFNEVAALE 466 Query: 389 IANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGE 448 A R PL V D+D FK+IND +GHA GDEV+ +V R +R +D +AR GGE Sbjct: 467 FAKVRRLHQPLSVISFDIDLFKQINDNYGHAAGDEVIKAAARVSRNAVREIDFVARIGGE 526 Query: 449 EFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGLA-LYYPGESQAELLK 507 EF +L+P + + A R++ + ++ + L T S G+A L +S LL+ Sbjct: 527 EFAILLPGSTIEQAAATAERLRELVIAEQVSYQGKLLAFTASFGVAQLKDSDQSFEALLQ 586 Query: 508 RADVALYKAKNAGKNRI 524 RAD +Y+AKN G+NR+ Sbjct: 587 RADEMMYRAKNLGRNRV 603 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,029,569 Number of extensions: 37706 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 30 Length of query: 537 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 449 Effective length of database: 895,685 Effective search space: 402162565 Effective search space used: 402162565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)