BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2773.p (217 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 334 3e-93 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 210 7e-56 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 182 2e-47 gi|152983037|ref|YP_001352599.1| two-component response regulato... 158 3e-40 gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding respons... 96 1e-21 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 334 bits (856), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 158/209 (75%), Positives = 191/209 (91%) Query: 9 IKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDRN 68 IKVLIADDHAIVREGL+QI A +KDIVVAG+A NG+EAIKL+REG V+LLDI +PDR+ Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAAG 128 GI++LKQ++KE P++ VL+LS+HREDQYAIR+LKAGA+G+LNKQ++P+E++ AIRQ AAG Sbjct: 67 GIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAG 126 Query: 129 RKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTIS 188 RKY+S +LAQELANQI DH+TPLHETLSDREYQT+ MIASGKTVSDIA EL+LSVKTIS Sbjct: 127 RKYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANELVLSVKTIS 186 Query: 189 MYRSRVLAKMKMRHNAELTHYALKNDLVE 217 MYRSR+L KMK+RHNAELTHYA+KN LV+ Sbjct: 187 MYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 210 bits (534), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 149/209 (71%) Query: 9 IKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDRN 68 IK+L+ DDHA+VR G++ A D+ + G AA EAI+L R D D++LLDI +PD++ Sbjct: 2 IKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKS 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAAG 128 G+++LKQI++E+PELPVLILS+H E +YA++ L++GA+G++ K+A E++ AI+ G Sbjct: 62 GVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRG 121 Query: 129 RKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTIS 188 KY+S ++A+ L ++ + PLHETLS REY+ + G V+ IA EL LSVKT+S Sbjct: 122 HKYISHTVAELLTTELDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVS 181 Query: 189 MYRSRVLAKMKMRHNAELTHYALKNDLVE 217 YR+RVL KM M +NA + +YA+K +L++ Sbjct: 182 TYRARVLQKMNMENNAGIIYYAIKQNLID 210 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 182 bits (461), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 145/209 (69%), Gaps = 2/209 (0%) Query: 9 IKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDRN 68 I++LIADDHAI+R+GL+QI + ++ VAG A+NG E ++ R DV++LD+ +P R+ Sbjct: 2 IQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPGRS 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAAG 128 GI +++QI +P+LP+L+LS+H+E QYA++A++AGA+G++ K + S++I IR+ A G Sbjct: 62 GIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVAEG 121 Query: 129 RKYVSPSLAQELANQI-GFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTI 187 +VSP ++ +L Q+ + D P H L+ RE+Q M+ G +V+DIA L LS KTI Sbjct: 122 GTFVSPEISAKLIKQLHKPETDLP-HTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTI 180 Query: 188 SMYRSRVLAKMKMRHNAELTHYALKNDLV 216 S +++ VL KM+ A L +YALK+ L+ Sbjct: 181 STHKAAVLQKMEASTTASLVYYALKHGLI 209 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 158 bits (399), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 136/212 (64%), Gaps = 7/212 (3%) Query: 9 IKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVLPDRN 68 +++L+ADDHA++REGL+ + +V I V A+ G + +L R D D++LLD+ +P + Sbjct: 2 LRILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRTDVDLILLDMTMPGIS 61 Query: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQAAAG 128 G ++ IR ++ +L+LS+H E Q+A RAL AGA+G++ K P +I AI + A G Sbjct: 62 GATLIHHIRSQKTAPNILVLSMHDEVQFARRALDAGASGYITKDTDPQTLIDAIHRVAEG 121 Query: 129 RKYVSPSLAQELANQIGFDHDT---PLHETLSDREYQTMVMIASGKTVSDIAAELLLSVK 185 +++S LA+E+ FDH T P HE LS REY+ ++ G+ V++IA EL +S K Sbjct: 122 GRFISRGLAEEML----FDHGTRARPSHELLSTREYEIFQLLVHGRGVNEIADELSISNK 177 Query: 186 TISMYRSRVLAKMKMRHNAELTHYALKNDLVE 217 T+S +++R++ KMK + ++L YA+ + ++E Sbjct: 178 TVSTHKTRLMEKMKCENVSQLIRYAIAHGMLE 209 >gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 118/212 (55%), Gaps = 6/212 (2%) Query: 5 ATAAIKVLIADDHAIVREGLRQICAVSKDIVVAGNAANGLEAIKLAREGDGDVMLLDIVL 64 ++A K++IA+DH ++REGLR + A + + + +G + +L ++ D++LLD+ L Sbjct: 43 SSAMTKIVIAEDHTLIREGLRSLMAHVAGMEIVADTGSGAQVEELLQQTPTDLLLLDLDL 102 Query: 65 PDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQASPSEVIAAIRQ 124 P +GI + +I++ P + +LIL+ + +A AGA G+L K SE++ AI Sbjct: 103 PGCHGITLTARIKQSHPHIKILILTGSTDHNSVRQAFAAGADGYLLKLEDSSELLEAIPT 162 Query: 125 AAAGRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIAAELLLSV 184 R+YVS L Q D + ++ RE Q + ++A+GK+ +IA L LSV Sbjct: 163 VLDNRRYVSKLLGPLTHFQDSED------QAVTPREQQILKLVAAGKSSQEIADTLELSV 216 Query: 185 KTISMYRSRVLAKMKMRHNAELTHYALKNDLV 216 T+ ++ ++AK+ + + ELT YA+ L+ Sbjct: 217 FTVRKHKQNLMAKLSLHNAVELTRYAMHQGLL 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 455,091 Number of extensions: 17843 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 19 Length of query: 217 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 137 Effective length of database: 925,261 Effective search space: 126760757 Effective search space used: 126760757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)