BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2772.p (233 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982585|ref|YP_001353143.1| two-component sensor histidine ... 132 2e-32 gi|152981531|ref|YP_001354607.1| Signal transduction histidine k... 118 4e-28 gi|152982038|ref|YP_001354301.1| signal transduction histidine k... 108 4e-25 gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [J... 105 2e-24 gi|152982241|ref|YP_001352209.1| two component sensor histidine ... 70 1e-13 >gi|152982585|ref|YP_001353143.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 490 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 120/209 (57%), Gaps = 6/209 (2%) Query: 25 QVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQA 84 V ++E+ER+RIAR++HD+LG L+ + MAL L +L + L +A Y + L+ + Sbjct: 270 HVNTVKEKERTRIAREIHDDLGGNLTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRT 329 Query: 85 SQGMERIIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLSLLR 144 + + RI DL P I++FGLV A+ WQ + F +Q G+ C+ + D +L R Sbjct: 330 IETVHRIAGDLRPGILDFGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFR 389 Query: 145 ILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFD-PDRA-PRGGRIGQGLANM 202 I +EAL N A+HA A + V+L + ++L + D+G G + DRA P+ G+ M Sbjct: 390 IFQEALTNIAKHAQASLVSVQLMHTPQYVRLEIIDNGRGIELADRAKPKSF----GIRGM 445 Query: 203 RQRAQALGGSLVLEARAGGGTLVRLEMPV 231 +R+ A+GGSL + GGT+V + +P+ Sbjct: 446 VERSVAMGGSLSVSTAPKGGTVVAINLPL 474 >gi|152981531|ref|YP_001354607.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 354 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 26 VQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQAS 85 +Q +REEER+RI+R+LHDELG L+ + + L + Q WL +++ Sbjct: 141 LQVVREEERTRISRELHDELGQSLTAIRIGLSVIETQHEMHDDEWLKSVSGLKKIADSTV 200 Query: 86 QGMERIIDDLHPPIV-EFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLSLLR 144 + ++RI DL P I+ E GL+ A+ W FS +S + +L T ++ R Sbjct: 201 ESVQRIAADLRPLILDELGLLPAMDWLLESFSERSAIAYELSLPSTPLAFSREASTAIFR 260 Query: 145 ILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMRQ 204 IL+E+L N +RH+ A + V L+ ++ + L + D+G G D + GL MR+ Sbjct: 261 ILQESLTNVSRHSQATLVGVALKETKDFITLKITDNGKGIDSSVSRHD---SLGLLGMRE 317 Query: 205 RAQALGGSLVLEARAGGGTLVRLEMP 230 RA LGG L +++RAG GT + + +P Sbjct: 318 RAFMLGGKLKIQSRAGSGTSIEVRIP 343 >gi|152982038|ref|YP_001354301.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 108 bits (269), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 114/212 (53%), Gaps = 15/212 (7%) Query: 25 QVQRIREEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQA 84 ++ REEE+ IAR+LHD+LG+ L+ L M L L +Q+ E + ++ + LL Sbjct: 452 HLETTREEEKRSIARELHDDLGSALTALNMHLSLLFQQMPPEPK-FTERSLKIKALLSSI 510 Query: 85 SQGMERIIDDLHPPIVE-FGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVV---- 139 + RI + L P ++ FG+ A+ Q F + +G+ C P+D + Sbjct: 511 TDATRRIQNGLRPDKLDVFGVKVAIAEQAAEFEKYTGVTCNASL-----PDDRLIYAPRV 565 Query: 140 -LSLLRILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQG 198 ++L R+++E+LNN A+HA A H++V L E+ + L++ D+G G + G + G Sbjct: 566 DIALFRMVQESLNNIAKHAQATHVDVVLDDTEDEILLTIRDNGVGMP---TAQSGVMTHG 622 Query: 199 LANMRQRAQALGGSLVLEARAGGGTLVRLEMP 230 L MR+RA LGGS+ + + G GT + + +P Sbjct: 623 LRGMRERAGYLGGSVQVTSVVGRGTTIAISIP 654 >gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [Janthinobacterium sp. Marseille] Length = 626 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 15/208 (7%) Query: 31 EEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADYAQQLLQQASQGMER 90 E+ER IAR+LHD+L LS L M + ++ + + QA+ + L + Sbjct: 427 EDERKHIARELHDDLAQHLSALRMNVSVMKLEFGHLSSAFSGQAETMIERLDATIKIARN 486 Query: 91 IIDDLHPPIVEFGLVDALTWQCRHFSRQSGLECKLQCDCTLQPEDEFVVLS------LLR 144 +I L P ++ G+V AL W + FS + C+L DE ++LS + R Sbjct: 487 VITALRPTALDMGIVQALEWLVKDFSTHKEISCRLHI------HDENLILSDRSATAIFR 540 Query: 145 ILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMRQ 204 I +E+L N +RHA A +++V L + L++ DDG GF+ P GL +++ Sbjct: 541 IAQESLRNISRHAEACNVDVNLSHKDGMCLLAIRDDGRGFNTTNVPFNSF---GLMGIKE 597 Query: 205 RAQALGGSLVLEARAGGGTLVRLEMPVA 232 R LGG + +E+ G GT +R+ +P Sbjct: 598 RVLILGGKVEIESEEGQGTTIRVNIPTT 625 >gi|152982241|ref|YP_001352209.1| two component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 643 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 22/208 (10%) Query: 31 EEERSRIARDLHDELGAQLSGLGMALGQLREQLAQEKHPWLAQADY-AQQLLQQASQGME 89 +ER R+ +D+HD LG+ L + +R +H +D+ Q+L+ ++ Sbjct: 450 SDERQRLMQDMHDGLGSSL------ISAIRSV----EHG--GVSDFKISQILKDCLDDLK 497 Query: 90 RIIDDLHPPIVEFGLVDAL-TWQCRHFSRQSGLECKLQCDC----TLQPEDEFVVLSLLR 144 ID + P +E LV L T + R R G L + TL D L +LR Sbjct: 498 LTIDSMEP--IEADLVLLLATLRFRLEPRLEGTGITLLWEVQDLPTLDWLDPSSALHILR 555 Query: 145 ILREALNNAARHAHARHIEVRLQVDEERLQLSVADDGSGFDPDRAPRGGRIGQGLANMRQ 204 I++E++ N RH A I V DE+ + +S+ D+G GFD D+A G G+GL N ++ Sbjct: 556 IVQESVANILRHTRADQIRVSTSRDEDGVSVSIEDNGRGFDIDKA-LAGVAGRGLHNQQR 614 Query: 205 RAQALGGSLVLEARAGGGTLVRLEMPVA 232 RA A+ G + E+ G V L +P+A Sbjct: 615 RAMAVNGKVSWESGPDGTKFV-LWLPLA 641 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 461,388 Number of extensions: 15615 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 6 Length of query: 233 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 153 Effective length of database: 925,261 Effective search space: 141564933 Effective search space used: 141564933 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)