BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2771.p
         (148 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980067|ref|YP_001352750.1| two-components system response ...    77   4e-16
gi|152980160|ref|YP_001353976.1| phosphate regulon two-component...    56   1e-09

>gi|152980067|ref|YP_001352750.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 148

 Score = 77.4 bits (189), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPH-AVDHPDTLPC 59
           + +  IL+ + +    E    +L    L     W +D +  ++ +F     +     +P 
Sbjct: 4   LQKIQILLAEDTQSDAEATLLALKEVGLASNVVWVKDGQEVLDYVFCTGPFIGRVGGVPT 63

Query: 60  LILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVD 119
           LI+L+ ++P++ G+D+L +L++   TR +P+IM  +S +E D T  +  G N+Y+VKPV 
Sbjct: 64  LIMLDLKMPKVNGLDVLKILKTTEKTRFIPIIMLTSSAEEPDITYCYEYGVNNYIVKPVL 123

Query: 120 AREFMELINQTVAHW 134
             +F E +++   +W
Sbjct: 124 PVKFAEEVSRAGFYW 138


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component
           response regulator [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 3   RPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCLIL 62
           +P+IL+V+  P  +EL  F+L  +  + A    ++A  A + +           LP LIL
Sbjct: 5   KPTILIVEDEPPIIELVTFTLKGAGWNVAA--VQNAGDAWDFI--------QQRLPQLIL 54

Query: 63  LEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDARE 122
           L+  LP   G+ LL  +R+      LP+IM      E D       GA+DY+ KP   RE
Sbjct: 55  LDWMLPDQSGLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRE 114

Query: 123 FMELIN 128
               IN
Sbjct: 115 LTARIN 120


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 354,992
Number of extensions: 13265
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 73
Effective length of database: 943,746
Effective search space: 68893458
Effective search space used: 68893458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)