BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2770.p (549 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 348 6e-97 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 343 2e-95 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 334 9e-93 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 330 1e-91 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 330 1e-91 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 348 bits (892), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 248/552 (44%), Positives = 335/552 (60%), Gaps = 20/552 (3%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNQLKGYLADS 60 ++I RLI T++ + L+ GA G++ LQ L+ + + ++N L + Sbjct: 5 LSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITRLFQA 64 Query: 61 RLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDRALIQADQANIEV 120 R R+ + ++ + +E+ D D + Y L + ++ L AN + Sbjct: 65 RSTIDRVLIKSSGSKNAEIFARADTLRNESDAAWKQY-YALPMNADEKKLADEVTANRDT 123 Query: 121 Y-RKALVPFFAAAYANDMEGVRA-SLQAGTPLAISAAAAKKGFEDHILIGRKKIDAIKLE 178 Y R+ +P A A E L+ TPL I + + ++ + K A E Sbjct: 124 YLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEF----QMKAAAASYE 179 Query: 179 SDEAYAFALRTMIAV--IVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPV 236 S ++ F+L + A+ ++ +L+ + ++R ++ LG + F +S DL+ + Sbjct: 180 SSQSM-FSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAG-DLTSRI 237 Query: 237 PVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAA 296 V+ +E+G + ++E V R + ++ VA +QIAAGN DLS+RTEQQA++ Sbjct: 238 EVKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASS 297 Query: 297 LEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKI 356 LEE+ASS+E+LTS V QN +NARQAN+LA SAS +A +GG VV QVVDTM IN S++KI Sbjct: 298 LEETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKI 357 Query: 357 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELI 416 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI Sbjct: 358 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLI 417 Query: 417 DDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMD 476 DSVDKV GSKLV +AG TM E+V VQ+VT I++ I AS EQSAGI QVNQAISQMD Sbjct: 418 GDSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMD 477 Query: 477 QGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL-GSRTALPVR-------SVDVTPA 528 Q TQQNAALVEEAAAAA++L QA KL V+VF+L G A PV+ +V +PA Sbjct: 478 QVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTASKIAAVASSPA 537 Query: 529 -TNRLPDAAAPV 539 R A APV Sbjct: 538 PVKRAIAAPAPV 549 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 343 bits (879), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 247/538 (45%), Positives = 329/538 (61%), Gaps = 27/538 (5%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQ------RAQQRLELIQNRIIPGMDSLNQLK 54 M I RL+L L + + ADG+ QL R+ L + + R++ ++ K Sbjct: 7 MKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT--K 64 Query: 55 GYLADSRLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDRALIQAD 114 +A R G S LA S + A D + +S+ E L+ DQ++ L Sbjct: 65 ASIA--RTIGVAKSADPALAQFSA-KFAADDSKQSM--EIIQKLEPLLNTDQEKELY--- 116 Query: 115 QANIEVYRKALVPFFAAAYANDMEG--VRASLQAGTPLAISAAAAKKGFEDHILIGRKKI 172 A I RK+ + EG A+ T +A + K F + + + RK++ Sbjct: 117 -AKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQM 175 Query: 173 DAIKLESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTL-- 230 DA + + A + R ++ ++ VL G+ L I I R +T ++ + Sbjct: 176 DAGTAQLSDVEAASTRQLM-LLSAMVLAFGIFCAWRLTIGIT---RPLKTAVDAARRVAG 231 Query: 231 -DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSAR 289 DL+ + E DE G AA + + +V R T+++T A+ +IAAGN DLS+R Sbjct: 232 GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSR 291 Query: 290 TEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSI 349 TEQQA++LEE+ASS+E+LTS V QN +NARQAN+LA SAS +A +GGDVV QVV TM+SI Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSI 351 Query: 350 NHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 409 N SSRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA Sbjct: 352 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAA 411 Query: 410 KEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVN 469 KEIK LI DSV KV +G+KLV +AG+TM EIV+S++RVT I+ I AS EQSAGI Q+N Sbjct: 412 KEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQIN 471 Query: 470 QAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL-GSRTALPVRSVDVT 526 QAI QMD TQQNA+LVEEAAAAA+++Q QA KL VV F+L ++ A P R+ VT Sbjct: 472 QAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVT 529 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 334 bits (856), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 233/500 (46%), Positives = 311/500 (62%), Gaps = 30/500 (6%) Query: 48 DSLNQLKGYLADSRLAGYRLSVFANLADKSELQKAVDAANKSLDE--EFAHYERDLIFDD 105 D LNQ+ + ++ L + ++ A L +++ KA D+ N +L E + ER Sbjct: 58 DDLNQIARNMRNALLMTEKAAIQAEL---TQIGKATDSLNNALVELEKTVRSERG----R 110 Query: 106 QDRALIQADQANIEVYRKALVPFFAAAYANDMEGVRASLQAGTPLAISAAAAKKGFEDHI 165 Q A +QAD++ + + +A + E V P +S A+ D+ Sbjct: 111 QTIAGLQADRSKFLPLKDDFIKLASAGIKD--EAVALLFAEVRPAQLSYLASIDKLIDY- 167 Query: 166 LIGRKKIDAIKLESDEAYAFALRT--MIAVI-VVAVLLTGVLGIQMLRIVIHSLGRIQQT 222 + + +K EA A A +T +I + ++AVL+ V + R + L + Sbjct: 168 -----QNELMKKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVL 222 Query: 223 FEHVSQTLDLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAG 282 V+ DL+ + VE DE G A + ++++V+ R TD++ A+ QIA G Sbjct: 223 ARKVADG-DLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATG 281 Query: 283 NADLSARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQV 342 N DLS+RTEQQA++LEE+ASS+E+LTS V QN ENARQ+N+LA SAS +A +GG VV +V Sbjct: 282 NLDLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKV 341 Query: 343 VDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 402 VDTM IN S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA Sbjct: 342 VDTMGEINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLA 401 Query: 403 QRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQS 462 QRSA+AAKEIKELI DSVDKV GS+LV+ AG+TM E+V+SV+RVT I++ I AS EQ+ Sbjct: 402 QRSASAAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQT 461 Query: 463 AGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRS 522 GI Q+NQA+ QMDQ TQQNAALVEEAAAAA++LQGQA L VV VF+L Sbjct: 462 DGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHG------ 515 Query: 523 VDVTPATNRLPDAAAPVNPQ 542 T N +P AP P+ Sbjct: 516 ---TTVVNAVPTYTAPEQPK 532 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 238/318 (74%), Gaps = 7/318 (2%) Query: 231 DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSART 290 DLS + V DE G A + + + VS RS T+++ A+RQIA+GN DLS+RT Sbjct: 232 DLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRT 291 Query: 291 EQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSIN 350 E+QA++L E+A+S+ QLTS V QN +NARQAN LA SAS +A +GG VV +VVDTM SIN Sbjct: 292 EEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASIN 351 Query: 351 HSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 410 S+RKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAK Sbjct: 352 ESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAK 411 Query: 411 EIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQ 470 EIK LI DSV KV +GSKLV +AGSTM+EIVDSV+RVT I+A I AS EQS+GI QVNQ Sbjct: 412 EIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQ 471 Query: 471 AISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQLGSRTALPVRSVDVTPAT- 529 AI QMDQ TQQNAALVEEAAAAA++LQ QA L VV+ F+L V S+D P Sbjct: 472 AIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAFVSSLDDIPVVR 531 Query: 530 NRLP----DAAAPV--NP 541 N P AA P+ NP Sbjct: 532 NTTPAIRTQAAKPLLSNP 549 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 330 bits (846), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 209/357 (58%), Positives = 257/357 (71%), Gaps = 15/357 (4%) Query: 196 VAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTL---DLSRPVPVERMDEIGHTAAAFN 252 VA+LL+ LGI ++ S+ R V+QT+ DL+ + V+ DE G A Sbjct: 194 VALLLSIGLGI----VISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALK 249 Query: 253 KLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVL 312 + ++ +V RS T ++ A+ QIA+GN DLS+RTE+QA++LEE+ASS+E+LTS V Sbjct: 250 DMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVK 309 Query: 313 QNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIVDIIAVIDGIAFQTNI 372 QN +NARQAN L+ SAS IA +GG VV +VV TMN IN S++KI DII VIDGIAFQTNI Sbjct: 310 QNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNI 369 Query: 373 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQ 432 LALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LIDDSV +V +GSKLV Q Sbjct: 370 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQ 429 Query: 433 AGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQGTQQNAALVEEAAAA 492 AGSTM+E+VDSV+RVT I+A I AS EQSAGI QVNQAI+QMD TQQNAALVEEAAAA Sbjct: 430 AGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAA 489 Query: 493 AQALQGQAEKLESVVAVFQLGSRTA-------LPVRSVDVTPA-TNRLPDAAAPVNP 541 A +L+ QA KLE V+VF++ + VRS V PA ++L V+P Sbjct: 490 AGSLKDQAVKLEQTVSVFKIDASAPQQTEHQDTSVRSTPVRPALASKLSSIKRAVSP 546 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 873,732 Number of extensions: 29275 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 22 Length of query: 549 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 461 Effective length of database: 895,685 Effective search space: 412910785 Effective search space used: 412910785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)