BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2748.p (328 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981199|ref|YP_001351939.1| hypothetical protein mma_0249 [... 114 1e-26 gi|152981140|ref|YP_001355236.1| aldo/keto reductase family oxid... 99 3e-22 gi|152981244|ref|YP_001351942.1| hypothetical protein mma_0252 [... 91 8e-20 gi|152982773|ref|YP_001352426.1| aldo/keto reductase family oxid... 87 2e-18 >gi|152981199|ref|YP_001351939.1| hypothetical protein mma_0249 [Janthinobacterium sp. Marseille] Length = 337 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 145/310 (46%), Gaps = 40/310 (12%) Query: 4 RRFGRTGAEVSEIGFGAWAIGGSWGDVSAQDAKAALHAALDAGVSFIDTADVYGDGRSEQ 63 R FGRTG ++S + G G D + A+DAG++ IDTA+VY GRSE+ Sbjct: 7 RNFGRTGVKISPLTLGCMMFGNK---TELDDTVRIIDRAIDAGINIIDTANVYARGRSEE 63 Query: 64 LIAQVLKERGGPRP-FVATKAGRRLSPHVASGY----QRDNLTAFVERSLQNLEVDCLDL 118 + LK G + F+A+K L H G R ++ VE SL+ L+ D LDL Sbjct: 64 FTGEALKRNGKRKDIFLASKV--HLPMHDTDGNLRGSSRRHIIQQVEDSLRRLQTDYLDL 121 Query: 119 VQLHCP-PTEVYYQQEVFGYMDELVAAGKIRHYGVSV---EKVEEAL---KAIEYPNVKS 171 Q+H P PT E +D+LV +GK+R+ G + +V EAL K + S Sbjct: 122 YQIHRPEPTTAI--DETLRALDDLVKSGKVRYIGSTTFAGWQVVEALWASKELGLNRFVS 179 Query: 172 VQIIFNIFRQRPISLFLHEAQRRDIAVIARVPLASGLLTGK------MSAQTTFAADDHR 225 Q +N+ +R L A+ +AVI P+ GLL+GK + + + + Sbjct: 180 EQPPYNLLDRRIERELLPVAETFGLAVIPWSPIGGGLLSGKYRKGQPLPLDSRYTNPNPM 239 Query: 226 QFNRH-GEAFDVGETFSGVPYEVALAAVEKIRTLVPPGVSMAQFALRWILMESGVSTVIP 284 Q R FDV E S + A EK GV ++Q AL W+ + GV++ I Sbjct: 240 QARRFVDRVFDVIEPLSEL-------AAEK-------GVPLSQLALAWVAQQRGVTSAIT 285 Query: 285 GARNVQQAQS 294 G R ++Q + Sbjct: 286 GPRTLEQLED 295 >gi|152981140|ref|YP_001355236.1| aldo/keto reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 277 Score = 99.0 bits (245), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 138/316 (43%), Gaps = 66/316 (20%) Query: 9 TGAEVSEIGFGAWAIGGSWGDVSAQDAKAALHAALDAGVSFIDTADVYGDGRSEQLIAQV 68 +G V +G G W +G D A+L LD G++ IDTA++YGDG SE+L+ + Sbjct: 8 SGLAVPVLGQGTWYMGDEAH--RRADEIASLRLGLDLGMTLIDTAEMYGDGASEKLVGEA 65 Query: 69 LKERGGPRPFVATKAGRR-----LSPHVASGYQRDNLTAFVERSLQNLEVDCLDLVQLHC 123 + AGRR +S + S R A ERSL+ L DC+DL LH Sbjct: 66 I-------------AGRRDEVFLVSKVLPSNASRSGTIAACERSLRRLGTDCIDLYLLHW 112 Query: 124 PPTEVYYQQEVFGYMDELVAAGKIRHYGVS---VEKVEEALKAIEYPNVKSVQIIFNIFR 180 + E + L AGKIRH+GVS V+ + E +A + + Q+++N+ R Sbjct: 113 RGRTPF--AETIAAFEALQDAGKIRHWGVSNMDVDDMREIARAPGGDAMATNQVLYNLTR 170 Query: 181 QRPISLFLHEAQRRDIAVIARVPLASGLLTGKMSAQTTFAADDHRQFNRHGEAFDVGETF 240 + L +AQ R + ++A P+ G LT + E D+ + Sbjct: 171 RGIEFDLLPQAQARGLPLMAYSPIEQGRLT------------------EYPEVLDIADRH 212 Query: 241 SGVPYEVALAAVEKIRTLVPPGVSMAQFALRWILMESGVSTVIPGARNVQQAQSNSAASD 300 GV+ AQ AL W+L + GV IP A + + N AA D Sbjct: 213 ---------------------GVTPAQVALAWVLRQEGV-IAIPKASTPEHVRENRAALD 250 Query: 301 LPPLAQEVMQALRELY 316 L L E ++ L +++ Sbjct: 251 L-QLTAEDLEELDDMF 265 >gi|152981244|ref|YP_001351942.1| hypothetical protein mma_0252 [Janthinobacterium sp. Marseille] Length = 337 Score = 91.3 bits (225), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 24/304 (7%) Query: 1 MKSRRFGRTGAEVSEIGFGAWAIGGSWGDVSAQDAKAALHAALDAGVSFIDTADVYGDGR 60 M+ G++G +VS + G GG+ Q + + A + G++FIDTAD+Y G Sbjct: 1 MQYENLGKSGLKVSRLCLGTMMFGGA---SDEQTSHQIIQHAHEHGINFIDTADIYTGGE 57 Query: 61 SEQLIAQ-VLKERGGPRPFVATKAGRRLS--PHVASGYQRDNLTAFVERSLQNLEVDCLD 117 SE+++ + + +R + +ATK G P+ G R + VE+SLQ L D +D Sbjct: 58 SERVVGKGIAAQRD--KWVLATKVGNGSDKWPN-EKGLSRRRIIQAVEQSLQRLGTDYID 114 Query: 118 LVQLHCPPTEVYYQQEVFGYMDELVAAGKIRHYGVS-------VEKVEEALKAIEYPNVK 170 + LH P + V + +L+A GKIR++G+S E V + + P + Sbjct: 115 IYYLHRPDPATPLHETVRA-LGDLIAQGKIRYFGLSNFSAWQLAEVVHLSKELGVAPPIV 173 Query: 171 SVQIIFNIFRQRPISLFLHEAQRRDIAVIARVPLASGLLTGKMSAQTTFAADDHRQFNRH 230 S Q +N + P L + V++ PLA G+LTGK ++ Q +R Sbjct: 174 S-QPYYNAANRMPEVEHLPACHFHGLGVVSYSPLARGVLTGKY-----LPGNEPDQNSRV 227 Query: 231 GEAFDVGETFSGVPYEVALAAVEKIRTLVPPGVSMAQFALRWILMESGVSTVIPGARNVQ 290 G P +ALA + V G + + AL W+L V++VI G R + Sbjct: 228 GRGDKRALQTEWRPESIALAQALQEHAQV-HGTTNIELALAWVLNNRLVTSVIGGPRTFE 286 Query: 291 QAQS 294 Q Q+ Sbjct: 287 QWQA 290 >gi|152982773|ref|YP_001352426.1| aldo/keto reductase family oxidoreductase TAS [Janthinobacterium sp. Marseille] Length = 349 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 164/358 (45%), Gaps = 59/358 (16%) Query: 1 MKSRRFGRTGAEVSEIGFGAWAIGGSWGDVSAQ-DAKAALHAALDAGVSFIDTADVY--- 56 MK ++ G+T +VS I G +WG+ + + +A A L A+ AGV+ ID A++Y Sbjct: 1 MKYQQLGKTDIKVSNIALGTM----TWGEQNTEAEAHAQLDMAIAAGVNLIDAAEMYPVP 56 Query: 57 ----GDGRSEQLIAQVLKERGG-PRPFVATKA-GRRLSPHV-------ASGYQRDNLTAF 103 G +E+ + LK+ G + +ATKA G PH + + R +LT Sbjct: 57 PKPETQGLTERYLGTWLKKSGKRDQLIIATKAAGPARLPHQPQHVRHGKTSFDRASLTDA 116 Query: 104 VERSLQNLEVDCLDLVQLHCP--PTEVYYQQEVFGYMDE--------------LVAAGKI 147 + +L+ L+ D +DL QLH P ++ +Q + DE V GKI Sbjct: 117 LHGNLERLQTDYIDLYQLHWPDRSVNIFGRQNYTHFPDEDTVPIAETLSVLADFVKQGKI 176 Query: 148 RHYGVSVEK---VEEALKAIE---YPNVKSVQ---IIFNIFRQRPISLFLHEAQRRDIAV 198 R+ GVS E + + L+A E P + S+Q + N + + +S F H+ Q I + Sbjct: 177 RYIGVSNETPWGLAQFLRASEQLNLPRIVSIQNPYSLVNRYFEIALSEFSHQEQ---IGL 233 Query: 199 IARVPLASGLLTGKMSAQTTFAADDHRQFNRHGEAFDVGETFSGVPYEVALAAVEKIRTL 258 +A PLA G+L+GK A F R + + + V VALA Sbjct: 234 LAYSPLAFGVLSGKYLHGARPADGRITLFERFVR-YKAPQVETAVEAYVALARKH----- 287 Query: 259 VPPGVSMAQFALRWILMESGVSTVIPGARNVQQAQSNSAASDLPPLAQEVMQALRELY 316 G+ AQ AL ++ +++ I GA + Q QSN + +L L + V+ + E++ Sbjct: 288 ---GLDPAQMALAYVNTRPFLTSTIIGATTLGQLQSNLDSINL-ELDEAVLNGIEEIH 341 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 711,801 Number of extensions: 26613 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 4 Length of query: 328 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 244 Effective length of database: 910,473 Effective search space: 222155412 Effective search space used: 222155412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)