BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2747.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981601|ref|YP_001353561.1| LysR family transcriptional reg... 170 1e-43 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 156 1e-39 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 153 1e-38 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 141 5e-35 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 137 9e-34 >gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 2/297 (0%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 + SDL F T+ G+F AA +LG++ SA SHA+K LE+R+ LL R++R++S T AG Sbjct: 5 DLSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTTEAG 64 Query: 68 SELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVK 127 L L + I L L +E G +RI AA LI+P + FV Q P + Sbjct: 65 ERLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYPNIT 124 Query: 128 LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTL 187 + + DD +IV++ +DAG+R G + + M++ + + ASP YL G PL+ Sbjct: 125 VEVNNDDGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLPLSP 184 Query: 188 EDLQQHTCLQLLLGDNSS-YQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYL 246 +DL+ H CL L Y WEF R +RV G + N+ + AA G GI Y Sbjct: 185 QDLKNHRCLNYRLATAGGLYAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLEGAGIGYC 244 Query: 247 LEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDIIRLQHGLAR 303 E ++ ++I +G L +L++W +H+Y+ +RR PAL LID +R ++ AR Sbjct: 245 FEHQVEQDIADGRLVRMLQDWSPTFHGYHLYFPDRRRT-PALSALIDALRYENLPAR 300 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 150/289 (51%), Gaps = 7/289 (2%) Query: 10 SDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAGS- 68 S+L FV I R G+ AAA L +TP A + + +LE RL +L+ R++R+IS T+ G Sbjct: 63 SELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEI 122 Query: 69 --ELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKV 126 AAR+ +++ A+ S G LR+N I P + EFVR+ P+V Sbjct: 123 YLGYAARILAEVKEMEDAVS---SGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQV 179 Query: 127 KLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLT 186 ++ V DKPID+V G+D IR+G +P+ + A ++R ASP YL+RHG P T Sbjct: 180 EVQFEVSDKPIDLVENGFDLAIRFGT-LPDTRLNARKLMSNRRFLCASPIYLERHGTPQT 238 Query: 187 LEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYL 246 L DL +H C+ D ++ W F R + I+V ++ N+ + A GI Sbjct: 239 LADLSRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIR 298 Query: 247 LEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 E ++K + G L+ +L ++ PSA +YY NRR+ R ID + Sbjct: 299 SEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFL 347 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 151/298 (50%), Gaps = 23/298 (7%) Query: 9 FSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPT---- 64 SDL F +++ GS AAA +LG+TP + S + +E RL +LL R++R IS T Sbjct: 4 ISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGE 63 Query: 65 ---AAGSELAARLEEGFEQIA----LALGQLESSAEGSLGELRINVFADAAHLLIEPAIP 117 A G+ L A LE ++I+ A G L+ SA G I P + Sbjct: 64 IYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHIT-----------PQLS 112 Query: 118 EFVRQCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDY 177 F R P+V++ + + D+P+++V +G+DA IR+G +P+ ++A +R + ASP Y Sbjct: 113 AFARLYPEVEVQLHLTDRPVNLVEQGFDADIRFGQ-IPDARLSARKIADNRRLVCASPAY 171 Query: 178 LDRHGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAA 237 L +HG PL DLQQH C+ L D W F G ++ ++V G ++ N+ + A Sbjct: 172 LQKHGTPLVPRDLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWA 231 Query: 238 KAGVGIAYLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 G GI E ++ + G L A+LEEW P A ++ + + H R L+D + Sbjct: 232 LDGQGIVVRSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFM 289 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 7/291 (2%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 + SDL F +++ GS A A +LG+TP A + + LE+RL +LL R++R +S T G Sbjct: 3 DLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEG 62 Query: 68 S---ELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCP 124 AR+ E++ A+ + + +G L RIN I PA+ +F+ + P Sbjct: 63 EIYLAEGARILTEIEELERAVSRSRAVPKGLL---RINATFGFGRRHIAPAVSDFIEKYP 119 Query: 125 KVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRP 184 ++++ + + D+P +++ + +D GIR G +P+ + A A+R + A+P Y+ RHG P Sbjct: 120 EIEVQLQLSDRPANLIDQAFDIGIRIGE-MPDARIIARKIAANRRLLCAAPAYIKRHGTP 178 Query: 185 LTLEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIA 244 DLQ+ C+ L D + W +GK ++ I+V G ++ N+ T+A A AG GI Sbjct: 179 SVPRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGIL 238 Query: 245 YLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 + ++ + G L +L +W P + + Y R + + +D + Sbjct: 239 MRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFV 289 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 137 bits (345), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 7/298 (2%) Query: 4 LDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISP 63 D + + +F GSF AAA G+TP+A S ++ RLE RL +L R++R I Sbjct: 5 FDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRL 64 Query: 64 TAAGSELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQC 123 T G + E Q+ A Q+ G LRI+V H + P +PEF ++ Sbjct: 65 TDGGRVYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRY 124 Query: 124 PKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGR 183 P V++ + + ++ ID E YD IR ++ L A V A+P YL R G+ Sbjct: 125 PDVQVEVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAE-LVLVAAPSYLKRAGK 183 Query: 184 PLTLEDLQQHTCLQL-LLGDNSSYQWEFG-----RGKYRQRIRVPGLVTINNTAATIAAA 237 P TLEDLQ+H C+Q L W F +GK + G + + A Sbjct: 184 PKTLEDLQKHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLA 243 Query: 238 KAGVGIAYLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDII 295 ++G G+ + ++ EG L +L ++GA S PF + Y + RH +R +D + Sbjct: 244 RSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFL 301 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 679,415 Number of extensions: 26947 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 30 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)