BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2745.p
         (408 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,...   382   e-107
gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931 [...    76   3e-15

>gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,
           emrA [Janthinobacterium sp. Marseille]
          Length = 399

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 275/374 (73%), Gaps = 6/374 (1%)

Query: 19  NGKRTRQLILLTVVLVIVAAACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTVVAVK 78
           NGKR ++LI+++V+L ++  A  ++W ++AR FE+TDDAYV GNVVQ++ QVGGTV+A+ 
Sbjct: 16  NGKRRQRLIVVSVLLALLLIAYGVWWAIYARHFEDTDDAYVAGNVVQVTPQVGGTVIAIH 75

Query: 79  ADDTQLVKLGQPLVALDAADTKLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAADANL 138
           ADDT+LV+ G+PLV LD +D K+ALDQA+A LAQ VR+ R LF+NN  L A V    A++
Sbjct: 76  ADDTELVEAGKPLVDLDHSDAKVALDQAEAQLAQTVREVRTLFVNNGALGAAVTQRVADV 135

Query: 139 ARAREDLQRRQAGLSSGAVSQEDVSHARDALKSATAALDQARAAAAANRALTDHTSVTEH 198
           ARAR+DL RRQ    +GAV++ED+ HAR  L +A +AL  AR    +N+ALTD T+V +H
Sbjct: 136 ARARDDLARRQELSGTGAVAKEDLEHARTTLIAAESALQAARDQLTSNQALTDGTTVAQH 195

Query: 199 PNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQIWIDA 258
           PNV +AA  V+ AYL  +R  ++AP++G+++KRSVQVGQR+A G PL+++VPL  +W+DA
Sbjct: 196 PNVQRAAAQVQAAYLALSRNTLLAPITGYIAKRSVQVGQRVAPGTPLLSVVPLNALWVDA 255

Query: 259 NFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNWIKVV 318
           NFKE Q+  +RIGQPVE+ +DVYGS VKY G V G SAGTG AF+LLP QNA+GNWIKVV
Sbjct: 256 NFKEVQVAKMRIGQPVELYSDVYGSGVKYHGKVAGLSAGTGAAFALLPTQNASGNWIKVV 315

Query: 319 QRVPVRIALDPEQVRAHPLRIGLSTTATVDI-HGDGRTLEAVPTN-----YQTNVYNDLD 372
           QR+PVRI LDP+++   PLR+GLS    VD+   +G +L +         YQT V+ D  
Sbjct: 316 QRIPVRITLDPKELEERPLRVGLSMQVEVDVAKSEGTSLTSTTAPRAEPAYQTAVFEDAG 375

Query: 373 KQADAIVERIISDN 386
            QA A V +II+ N
Sbjct: 376 SQAAARVAQIIAVN 389


>gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931
           [Janthinobacterium sp. Marseille]
          Length = 289

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 138/325 (42%), Gaps = 55/325 (16%)

Query: 28  LLTVVLVIVAAACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTVVAVKADDTQLVKL 87
           ++T V +++A     Y +    +   T D  V  +++ I+  V G V  V   D Q V  
Sbjct: 10  IITGVFLLLAILLGKYLWDDNMYSPWTRDGRVKADILHIAPDVSGIVTNVAVRDNQFVHK 69

Query: 88  GQPLVALDAADTKLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAADANLARAREDLQR 147
           G  L ++D +     L QA+A                 TLAA  A       R++E    
Sbjct: 70  GDILFSIDKSRYAHVLTQAEA-----------------TLAAQQAEKGM---RSKE--AA 107

Query: 148 RQAGLSSGAVSQEDVSHARDALKSATAALDQARAAAAANRALTDHTSVTEHPNVLQAATA 207
           R++ L +  V+ E+    R+A  S ++       AAAA R                    
Sbjct: 108 RRSTLDASIVTSEN----REAAASLSSIAGAKYQAAAAARD------------------- 144

Query: 208 VRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQIWIDANFKESQLQH 267
              A LN  R ++ APV G+V+   V  G    AG P +A++     ++   F+E++L +
Sbjct: 145 --TAQLNLERTDVRAPVDGYVTNLHVYAGDFATAGVPQLAVIDSNSYYVSGYFEETKLPY 202

Query: 268 IRIGQPVEVIADVYGSSVKYKGTVIGFSAGT-----GGAFSLLPAQNATGNWIKVVQRVP 322
           +++   VE+     G ++  +G +   S G           LL   N T NW+++ QRVP
Sbjct: 203 LKVNDKVEIRLMSGGPAL--QGHIESISRGITDRDASTGRELLADINPTFNWVRLAQRVP 260

Query: 323 VRIALDPEQVRAHPLRIGLSTTATV 347
           VRI +D E  + H L  G++ T  V
Sbjct: 261 VRIRID-ELDKNHQLVAGMTCTVIV 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 709,904
Number of extensions: 26046
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 323
Effective length of database: 906,776
Effective search space: 292888648
Effective search space used: 292888648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)