BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2744.p (500 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-li... 332 3e-92 gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein... 300 2e-82 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 156 3e-39 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 150 2e-37 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 147 1e-36 >gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 501 Score = 332 bits (852), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 203/470 (43%), Positives = 279/470 (59%), Gaps = 6/470 (1%) Query: 19 VLAALIGALALSGCASFDGIGSDKQLAQARDFNTQRSLSDPNPGAPDGQWPGSDWVQQFG 78 VL A A+ LS CASF GI L Q+ D+ + SL P G GQWP + W Q G Sbjct: 16 VLTACCAAVLLSACASFKGIEPTASLKQSSDYTSTASL--PQQG---GQWPDASWAQAIG 70 Query: 79 DAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEFSSTSIY 138 A L AL+ EA+A +PNLQ A AR+ A A +A GA PS A AS ++ I Sbjct: 71 GAPLQALVDEAIAGNPNLQVAAARVAGAQAAADAAGANARPSWSANASSTYQRYTENGII 130 Query: 139 PPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVSV 198 PPP GG + ++ + LN Y+ D W K+ A L A+S+ KAAQA + ARL ++ ++ Sbjct: 131 PPPLGGEYKSDNQLTLNFSYDFDFWGKHAAELRSALSAGKAAQAEQYNARLVISTAVARA 190 Query: 199 YSQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSRTSSADARAQLEQSA 258 + QLA QY D+ Q ++ + ++ +T R K GL +Q E Q S A RA+ Q Sbjct: 191 WVQLARQYGQLDLNQEQLKASAEIQRLTQLRFKVGLGTQSENQQVTQSLASLRAENAQLN 250 Query: 259 GQIVLLRQQLGALTGRGPDRGLQLAPPTLQNLATPALPAKLPLNLLGRRPDIVAARWQVE 318 I L R QL AL G+GPDRGLQ+ P L + ALP LPL L+GRRPDIVAARW VE Sbjct: 251 EAIALTRNQLAALLGKGPDRGLQIERPALPSETAIALPDALPLGLIGRRPDIVAARWNVE 310 Query: 319 AASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAITLPIFEGGALRAG 378 AA +D AK FYP++N+ A GF S+ +N ++S + GPAI LPIF+ +LRA Sbjct: 311 AAQGDIDAAKTLFYPNVNIMAFAGFSSIGLNNLLKSSSGIVGVGPAIYLPIFD-RSLRAN 369 Query: 379 LKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREALQAAERAHDLARER 438 LKG A+Y+ +ATYN+TL +A DVA Q+ ++ + Q + A QA+ + LA++R Sbjct: 370 LKGRVASYDGLIATYNQTLTEALHDVADQVQSLRAATLQSEQQHLATQASSNSFQLAQQR 429 Query: 439 YRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGFDAQ 488 R+G + L +LSA+ +L+QR+ + QA+R + ++ L KALGGGFDAQ Sbjct: 430 ERVGTTNMLPVLSAQMTLLSQRRIDLDTQARRSDLRITLIKALGGGFDAQ 479 >gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein [Janthinobacterium sp. Marseille] Length = 498 Score = 300 bits (767), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 255/467 (54%), Gaps = 11/467 (2%) Query: 29 LSGCASFDGIGSDKQLAQARDFNTQRSLSDPNPGAPD--GQWPGSDWVQQFGDAQLTALI 86 LS CA +G+ K AQ D N S + + A + QWP W +GDAQL ALI Sbjct: 17 LSACAD---MGNIKPQAQRMDANALGSGTVISQAAVNDAAQWPQQQWWHAYGDAQLDALI 73 Query: 87 QEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEFSSTSIYPPPYGGN- 145 AL+ SPNL A AR+ A A + LP+V A S+ R FS+ PPP GN Sbjct: 74 ATALSDSPNLHIAEARVRQAQAYAGMAESATLPNVSASTSMTRQLFSAHDFIPPPEAGNY 133 Query: 146 -WYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVSVYSQLAA 204 WYN + + Y+LDLW +++ LA A+ K + A Q ARLAL +IV Y QL+ Sbjct: 134 AWYN--RVAVEATYDLDLWGRHRQELAAALDEVKVSSAESQMARLALENNIVRSYVQLSL 191 Query: 205 QYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSRTSSADARAQLEQSAGQIVLL 264 Q+A++DI + T+ R + +RL GL ++++ Q + Q+EQ I++L Sbjct: 192 QFALKDITEDTLAHREKGLQVMRKRLAAGLATEMDVTQLEAAIPPLHIQIEQYDEAIIVL 251 Query: 265 RQQLGALTGRGPDRGLQLAPPTL--QNLATPALPAKLPLNLLGRRPDIVAARWQVEAASR 322 R QL AL G+GP G ++ PTL N A LPA LP +L+GRRPD+ A RW VEAA + Sbjct: 252 RNQLAALAGKGPAEGEKITRPTLALDNNAWLRLPAVLPADLIGRRPDVAARRWGVEAAGK 311 Query: 323 GVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGE 382 ++ AKA FYPDINL A IGF + SN S GPAI+LPIF+GG LR+ L Sbjct: 312 QIEAAKAAFYPDINLMAFIGFQGIGFSNFLKGDSSIRGVGPAISLPIFDGGRLRSNLGAH 371 Query: 383 YANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREALQAAERAHDLARERYRLG 442 A Y++AV +YN TL A VA + S ++Q + AL A +A LA + + G Sbjct: 372 TAAYDIAVESYNGTLIHALESVANTLVVAQSLQQQKNLNDGALVTASKARTLASKGFAAG 431 Query: 443 LISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGFDAQQ 489 + L LL++E +L Q Q + A+ E AL ALGGG+ +Q Sbjct: 432 MTDFLVLLNSEVALLTQEQQRAQITARMLESHAALMLALGGGYQPEQ 478 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 149/497 (29%), Positives = 237/497 (47%), Gaps = 37/497 (7%) Query: 20 LAALIGALALSGCASFDGIGSDKQLAQARDFNTQRSLSDPNPGAPDGQW----PGSD--- 72 L+ ++ AL L+GC++ + + N R S DG W P + Sbjct: 8 LSTMVAALVLAGCST----ARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDR 63 Query: 73 --WVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIR- 129 W + FGD QL+ LI EA S+ NL A AR+ A A+ A VDA R Sbjct: 64 GAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRS 123 Query: 130 -NEFSSTSIYPPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEAR 188 N +++ Y P L+ YE+DL+ + A A + +A+ + Sbjct: 124 GNAQGASTQYRAP------------LSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVL 171 Query: 189 LALTASIVSVYSQLAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSRTSSA 248 LAL + + Y + + + D+L++TV R +T R G S+++ Q++T A Sbjct: 172 LALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWA 231 Query: 249 DARAQLEQSAGQIVLLRQQLGALTGRGP-DRGLQLAPPTLQNLATPALPAKLPLNLLGRR 307 A+LE Q L L G+ P + L +AP A +P+ LP +LL RR Sbjct: 232 TTSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAA---AVVTVPSGLPSDLLERR 288 Query: 308 PDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAI-- 365 PDI A+ Q+ A+S + AKA F+P + L+ G++S + F +S+S GP + Sbjct: 289 PDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGT 348 Query: 366 --TLPIFEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRRE 423 ++P+F+GG ++ L ANYE VA Y + + DV ++A+ + +RQL + Sbjct: 349 ILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQ 408 Query: 424 ALQAAERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGG 483 A+ +A+ A LA RYR G S+ ++ A+ L+ ++S + QR V L +ALGG Sbjct: 409 AVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGG 468 Query: 484 GFDAQQA--GLAYSAAP 498 G++A A GLA +A P Sbjct: 469 GWEAPVAKDGLALAARP 485 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 149/480 (31%), Positives = 237/480 (49%), Gaps = 23/480 (4%) Query: 20 LAALIGALALSGCASFDGIGSDKQ-----LAQARDFNTQRSLSDPNPGAPDGQWPGSDWV 74 A+L+ L L GCA +G D Q +AQA + T+ NP DG+ G+ W Sbjct: 9 FASLLALLILGGCA----VGPDYQRPDAPVAQA--WKTEAGWQASNP--RDGELKGA-WW 59 Query: 75 QQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNEFSS 134 + F DA+L AL ++AL + + A+AR+ A A + P + AQA RN S+ Sbjct: 60 EIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSA 119 Query: 135 T---SIYPPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLAL 191 + Y N+ A V YELDL+ + + A ++ + AQA + RL L Sbjct: 120 ERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRLVL 179 Query: 192 TASIVSVYSQLAAQYAVQDILQRTV-QQRSALESITAERLKTGLDSQIERNQSRTSSADA 250 TA + + Y L A D+LQ+T+ Q AL+ I+A R + G S ++ NQ + +A Sbjct: 180 TAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISA-RHELGAASGLDLNQQQGLTAAT 238 Query: 251 RAQLEQSAGQIVLLRQQLGALTGR-GPDRGLQLAPPTLQNLATPALPAKLPLNLLGRRPD 309 + QL Q + + L G PD L P L PA+P P LL RRPD Sbjct: 239 QTQLTLLQDQRARYQNAIATLVGVPAPDFKL---PVNLAVTTAPAIPLTAPAALLERRPD 295 Query: 310 IVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAITLPI 369 I AA + AA+ + VA++ ++P + LS + G D+ SN F+A + + G + T I Sbjct: 296 IAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMI 355 Query: 370 FEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREALQAAE 429 F+GG A + A Y+ A+ Y +++ A +V + + + + L + A +A+ Sbjct: 356 FDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSAD 415 Query: 430 RAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGFDAQQ 489 R+ L+ +RY+ G+ ++L ++ A+ L+ ++ V L QR V L KALGGG+ A + Sbjct: 416 RSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWHAHE 475 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 135/420 (32%), Positives = 197/420 (46%), Gaps = 19/420 (4%) Query: 72 DWVQQFGDAQLTALIQEALASSPNLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNE 131 DW + FG ++L +L++ S ++ A AR+ A A GA LLP ++ RN Sbjct: 52 DWWRSFGSSELDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNG 111 Query: 132 FSSTSIYPPPYGGNWYNEKKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLAL 191 G + +AGL+ YELD W +N+A A + +AA+ L + Sbjct: 112 RLGGDGNGTATGTVY----QAGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTV 167 Query: 192 TASIVSVYSQ---LAAQYAVQDILQRTVQQRSALESITAERLKTGLDSQIERNQSR---T 245 TA + S + Q L + A+ D+ + Q+ L + R + G + +E Q R Sbjct: 168 TAGVASSWLQTVGLRERVAIADLSVASAQR---LLDVIESRARAGAANPLELAQQRGVLA 224 Query: 246 SSADARAQLEQSAGQIVLLRQQLGALTGRGPDRGLQLAPPTLQNLATPALPAKLPLNLLG 305 + ARA + Q A + L L GR P L LA L L PA+ A LP +LL Sbjct: 225 AQMRARAAIRQQAEDSL---TTLAVLLGRNPSL-LVLAGTELNKLQAPAVVAGLPADLLV 280 Query: 306 RRPDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDSLMDSNPFTAASKSIAFGPAI 365 RRPDI A Q+ A + A+A P I+L I S S+ F S+A G A Sbjct: 281 RRPDIARAEAQLSGADANIIAARAAMLPRISLGGDITAGSNRVSSVFDNPVYSLAAGLAA 340 Query: 366 TLPIFEGGALRAGLKGEYANYELAVATYNKTLNDAYADVARQIAAIHSTERQLPIRREAL 425 PIF G L AG A E +A Y + + A+ DV + A+ + Q + E L Sbjct: 341 --PIFNAGRLAAGRDLALAQREELLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEEL 398 Query: 426 QAAERAHDLARERYRLGLISHLTLLSAETGVLAQRQSLVALQAQRREQQVALYKALGGGF 485 + A+RA +LA RYR G + LTLL A+ + A + + L+ R + V+LYKALGGG+ Sbjct: 399 RQAQRAFNLAESRYRAGAETSLTLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGW 458 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 983,283 Number of extensions: 35354 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 14 Length of query: 500 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 413 Effective length of database: 899,382 Effective search space: 371444766 Effective search space used: 371444766 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)