BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2741.p (809 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 327 2e-90 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 325 8e-90 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 310 3e-85 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 300 3e-82 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 299 4e-82 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 327 bits (838), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 188/422 (44%), Positives = 252/422 (59%), Gaps = 8/422 (1%) Query: 357 SRLAYQ---DHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGHS 413 S L +Q D LTGL NR D L +AI+ R +I +DLDRF+ VND LGH Sbjct: 513 SELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNH-PIWIAFVDLDRFKFVNDTLGHQ 571 Query: 414 FGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPE-VDLDGALAQATHILRVLEQPL 472 GD LL+ +A RL + ++R+GGDEF ++LPE VD + I+ + QPL Sbjct: 572 AGDLLLKAIAERLQ-HAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQPL 630 Query: 473 SLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-SGVVIYDPAIDQSSQE 531 +++ + + IGVA YP G T EL+ A++AMY AK G + Y ++++ + E Sbjct: 631 TIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERALE 690 Query: 532 SLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIPFAET 591 L L +LR A+ER EF+L+ QP+L+L TG ++G EAL+RW HPE G + P FI AE Sbjct: 691 RLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEE 750 Query: 592 TGFIRMLTLWMMEKVAGLSAQLQAQGL-SLKFSVNLSTRDLLDQELPVAFAAILERHRLT 650 TG I + W++ + + Q GL SL+ SVNLS R Q+L + A LE +L Sbjct: 751 TGLIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQLP 810 Query: 651 PDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDELKID 710 P L +E+TES +M D A L L A+G LSIDDFGTGYSSL+YLK P+D LKID Sbjct: 811 PQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKID 870 Query: 711 KSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGK 770 +SFV + D DDA IV S I L H+L L V+AEGVE+EE L+Q CDQ QGYF + Sbjct: 871 RSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSR 930 Query: 771 PM 772 P+ Sbjct: 931 PI 932 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 325 bits (832), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 183/427 (42%), Positives = 260/427 (60%), Gaps = 9/427 (2%) Query: 353 ELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGH 412 E + RLA D LTGLPNR D L+ AIA R+G + +++++DLDRF+ VND +GH Sbjct: 469 ETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGH-AVWVVLVDLDRFKFVNDTMGH 527 Query: 413 SFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQATHIL-RVLE-- 469 GD LL+ ++ RL + + +ARLGGDEF ++LPE DG ++ ++ R++E Sbjct: 528 QAGDVLLKIISDRLQASVRESDT-VARLGGDEFVLVLPECG-DGPSGYSSDVIQRIMEAV 585 Query: 470 -QPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-SGVVIYDPAIDQ 527 +PL++Q L +G+A YP G LL+ A+VAMY +K G + Y PA++ Sbjct: 586 VKPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMND 645 Query: 528 SSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIP 587 + E L + ELR A+E +E +L+ QP+++L TGA++G EALVRW HP G V P +FI Sbjct: 646 QALERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFIS 705 Query: 588 FAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQELPVAFAAILER 646 AE TG I + W+++ + Q G + L+ +VNLS R L + L+ Sbjct: 706 LAEETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQE 765 Query: 647 HRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDE 706 L L +E+TES++M D R TL L ++G LS+DDFGTG+SSLAYLK P+D Sbjct: 766 TGLEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDT 825 Query: 707 LKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGY 766 LKID+SFV +A +QDDA IV S I L HNL L V+AEGVE+ +LR GC++ QGY Sbjct: 826 LKIDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGY 885 Query: 767 FMGKPMP 773 + KP+P Sbjct: 886 YFCKPLP 892 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 310 bits (793), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/433 (41%), Positives = 250/433 (57%), Gaps = 8/433 (1%) Query: 349 IANRELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILM-MDLDRFQQVN 407 +AN+EL ++ A QD+LT LPNR D L + + + R S + LM +DLD F+ +N Sbjct: 254 LANQEL--TKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQ--SRFALMFIDLDGFKAIN 309 Query: 408 DVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQATHILRV 467 D LGH GD LL VA R+ + A ARLGGDEF +L+ + + A + A + Sbjct: 310 DSLGHHIGDLLLIDVAKRIRDNI-RAQDTAARLGGDEFVMLIEVNEPEDAASVADKLCTT 368 Query: 468 LEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKG-SGVVIYDPAID 526 L QP + + + + A IG+A YP G T +LL A+ AMY K G +G ++ +++ Sbjct: 369 LNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMN 428 Query: 527 QSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFI 586 ++ L ++ +LR ALER EF L+ QPK G V+GAEAL+RW HP +G V P +FI Sbjct: 429 INAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFI 488 Query: 587 PFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQELPVAFAAILE 645 AE TG I + W++++ + +G K +VNLS+ + L L Sbjct: 489 SLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLA 548 Query: 646 RHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVD 705 R+ L L LE+TES M + + LE+L ++G +SIDDFGTGYSSL YLK LP Sbjct: 549 RNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPAT 608 Query: 706 ELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQG 765 ELKID+ F+ +A DDA IV + + LG +L LR+VAEGVE+E+ L +GCD QG Sbjct: 609 ELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQG 668 Query: 766 YFMGKPMPVEHFL 778 YFMG PM E F+ Sbjct: 669 YFMGHPMASEQFM 681 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 300 bits (767), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 252/444 (56%), Gaps = 8/444 (1%) Query: 342 FETMRSEIANRELKISRLAYQ---DHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMM 398 FE I R+L + + +Q D LTGLPNR D +++A+ +R G + I + Sbjct: 254 FEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTA-IAFL 312 Query: 399 DLDRFQQVNDVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGAL 458 DLD+F+ +ND LGH GD+LL+ A RL+ L +AR GGDEF +LL + + A+ Sbjct: 313 DLDQFKFINDSLGHQVGDELLKITAQRLTS-CLRESDTVARQGGDEFVLLLTDQPNEEAI 371 Query: 459 AQATH-ILRVLEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGSG 517 +L + QP + + IG+ P G+ + LL A+ AMY AK G Sbjct: 372 THTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRN 431 Query: 518 VVIYDPA-IDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPE 576 Y A ++ S + L LL+ LR+A+ ++F+L+ QPK+ L + +IGAEALVRW Sbjct: 432 NFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAH 491 Query: 577 KGFVGPDNFIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQE 635 G V P +FIP AE TG I L W++ + Q G + SVNLS R L + Sbjct: 492 SGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGD 551 Query: 636 LPVAFAAILERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSS 695 + IL L L LEITES + D ++ L +L ++G +S+DDFGTGYSS Sbjct: 552 IVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSS 611 Query: 696 LAYLKSLPVDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLL 755 L+YLK PVD LKID+SFV +A DQD A IV++ I LG NL L V+AEG+E+E+ + L Sbjct: 612 LSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFL 671 Query: 756 RQMGCDQGQGYFMGKPMPVEHFLE 779 GCD+GQGY M KP+P ++F++ Sbjct: 672 LANGCDEGQGYLMSKPVPNKNFVD 695 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 299 bits (766), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 166/439 (37%), Positives = 259/439 (58%), Gaps = 6/439 (1%) Query: 338 LGAAFETMRSEIANRELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILM 397 L F + A+ E ++ RLA +D LT LPNR + L +A+ + S +L Sbjct: 461 LAVTFRDVSDRKAHEE-ELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQD-SLAVLF 518 Query: 398 MDLDRFQQVNDVLGHSFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGA 457 +DLD F+ +ND LGHS GD LL+ VA RL +L G + RLGGDEF +LL + L Sbjct: 519 IDLDDFKNINDTLGHSSGDSLLQVVASRLES-VLRPGDSVVRLGGDEFTLLLESLPLQED 577 Query: 458 LAQ-ATHILRVLEQPLSLQEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGS 516 ++ A I++ QP +Q++ + + A +G++ YP G+ + LL A++AMY+AK G Sbjct: 578 ISLIANRIMQTFNQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKADGK 637 Query: 517 GVV-IYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHP 575 V +YD + + + + +L RA++ D F++Y QP++E TG ++G EALVRW HP Sbjct: 638 NKVRVYDKKLYEEIELRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHP 697 Query: 576 EKGFVGPDNFIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLSL-KFSVNLSTRDLLDQ 634 E+G + PD+FIP AE+TG I L +MEKV A Q Q L++ SVN+S R + Sbjct: 698 ERGLIAPDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEG 757 Query: 635 ELPVAFAAILERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYS 694 + A+ L ++ + P + +E+TESA+M + + + + +SA+G + +DDFGTGYS Sbjct: 758 NVSEFIASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYS 817 Query: 695 SLAYLKSLPVDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFL 754 SL+ L +D LK+D++F ++ + S + + L +RVVAEGVE+ E + Sbjct: 818 SLSLLYKFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRV 877 Query: 755 LRQMGCDQGQGYFMGKPMP 773 L+Q+GCD+ QGY + KP+P Sbjct: 878 LQQLGCDEIQGYLVSKPIP 896 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,707,398 Number of extensions: 68899 Number of successful extensions: 400 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 34 Length of query: 809 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 718 Effective length of database: 884,594 Effective search space: 635138492 Effective search space used: 635138492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)