BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2740.p
         (123 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981802|ref|YP_001355195.1| hypothetical protein mma_3505 [...   156   3e-40

>gi|152981802|ref|YP_001355195.1| hypothetical protein mma_3505
           [Janthinobacterium sp. Marseille]
          Length = 124

 Score =  156 bits (395), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 89/123 (72%), Gaps = 1/123 (0%)

Query: 1   MRLLATSLLALACASASFTASAQGAGVKTMDGILVDAHGMTVYTFDKDSANSGKSVCNGP 60
           M+L    L A+A    S +A AQ   VK  DGILV   GMTVYTFDKD A+SGKS CNGP
Sbjct: 1   MKLSQIVLSAVAAVVLSGSAYAQSVPVKKADGILVTTSGMTVYTFDKDVADSGKSACNGP 60

Query: 61  CAKLWPPVAPMGTPA-APYSTVTRDDGSAQLAYQGKPLYLYESDKKPGDRTGDNVKDVWH 119
           CA  WPPV+     A APYS VTRDDG+ QLAY+GKPLYL+ SDKK GDRTGDN KD+WH
Sbjct: 61  CATAWPPVSAKDVKASAPYSVVTRDDGTPQLAYKGKPLYLFASDKKAGDRTGDNFKDIWH 120

Query: 120 IVK 122
           +VK
Sbjct: 121 VVK 123


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 274,087
Number of extensions: 10830
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 50
Effective length of database: 951,140
Effective search space: 47557000
Effective search space used: 47557000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)