BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2739.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980264|ref|YP_001355194.1| ECF subfamily RNA polymerase si...   194   2e-51
gi|152980473|ref|YP_001353052.1| RNA polymerase sigma factor Rpo...    62   2e-11

>gi|152980264|ref|YP_001355194.1| ECF subfamily RNA polymerase sigma
           factor [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  194 bits (494), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 121/165 (73%), Gaps = 5/165 (3%)

Query: 1   MLACLPRLRRYARALTGARDSADDLVQDTLERAWQRLDSYQRGSDMRPWLFAIMHNLHAD 60
           ++AC+PRLRRYARAL G R  ADDLVQDT+ER W++L S+QRGSDMR WLF IMHNLH D
Sbjct: 8   LIACIPRLRRYARALLGDRTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGIMHNLHVD 67

Query: 61  QRRKPALATVELEQADEASATPLLPDQGLAL-DMEAALQRLPAEQREVLLLVVLEEMRYE 119
           Q RKP+L T EL+      A       GL + D+E+AL  LP EQRE+LLLV LEEM YE
Sbjct: 68  QVRKPSLPTEELDDDTPIPAAHTSVSDGLEMRDLESALHSLPTEQREILLLVALEEMSYE 127

Query: 120 DVAVTLGIPVGTVMSRLSRARERLRQSMDGPGGRGEAGSTLKVVK 164
           +VA TLG+P+GTVMSRLSRAR++LR  M+G        S LKVVK
Sbjct: 128 EVAATLGLPLGTVMSRLSRARQKLRTQMEGRA----VVSLLKVVK 168


>gi|152980473|ref|YP_001353052.1| RNA polymerase sigma factor RpoE
           [Janthinobacterium sp. Marseille]
          Length = 200

 Score = 61.6 bits (148), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 7   RLRRYARALTGARDSADDLVQDTLERAWQRLDSYQRGSDMRPWLFAIMHN-----LHADQ 61
           +L R    L   +  A+D+VQ+   +A++ L  ++  S    WL+ I  N     L    
Sbjct: 33  KLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTQG 92

Query: 62  RRKPALATVELEQA----------DEASATPLLPDQGLALDMEAALQRLPAEQREVLLLV 111
           RR P     ++E+A          D  +   LL  + +A  +  A++ LP E R  + L 
Sbjct: 93  RRAPTSTEADVEEAETFDDGDHLRDINTPESLLATKQIAQTLNLAMEELPEELRMAITLR 152

Query: 112 VLEEMRYEDVAVTLGIPVGTVMSRLSRARERLRQSM 147
            +E + Y+++A ++G P+GTV SR+ RARE + + +
Sbjct: 153 EIEGLSYDEIAESMGCPIGTVRSRIFRAREAISEKL 188


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 361,489
Number of extensions: 12987
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)