BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2730.p (222 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 345 9e-97 gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 130 7e-32 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 78 4e-16 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 76 2e-15 gi|152980892|ref|YP_001351781.1| GntR family transcriptional reg... 74 7e-15 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 345 bits (886), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 171/221 (77%), Positives = 184/221 (83%) Query: 2 DTPKTRSETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEM 61 D +TRSETLRE IEEMIAVG L PGQHLDET LAE+FGVSRTPIREALIQLASMGIV + Sbjct: 9 DNTQTRSETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVI 68 Query: 62 RPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSS 121 RPRRGAIVAEIGPQQLIEMFEVMAE EAMC RLAARRM+PAEHA L+A H AC+ ARD + Sbjct: 69 RPRRGAIVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAEHAILMATHLACKQARDDA 128 Query: 122 DPDAYFYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAA 181 D DAYFY NE FH IY GS N+FL EQARAL RRLRPYRRLQLRVR+R+ SFDEH A Sbjct: 129 DSDAYFYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTASFDEHGAV 188 Query: 182 VDAIIAGDAERTVEVLRQHIMIQGQRFADLVASLHQLKSAA 222 VDAII G + E+LRQHIMIQGQRF+DLVASL L S A Sbjct: 189 VDAIIEGKGDLAAELLRQHIMIQGQRFSDLVASLSALNSEA 229 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 130 bits (327), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 4/205 (1%) Query: 2 DTPKTRSETLRESIEE----MIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMG 57 D P+ + L +++ E +I G L PG L+E + E+ G+SRTP+REA+ LAS G Sbjct: 16 DLPRMERQRLHDAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEG 75 Query: 58 IVEMRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAA 117 ++++ P RGA V+++ ++ E FE+M+ EA+ G LAA R++PAE A++ HQA Sbjct: 76 LIDIVPNRGAFVSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLVC 135 Query: 118 RDSSDPDAYFYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDE 177 R +D Y+ N+ H+ I + NS L + +++RRL R ++ + +E Sbjct: 136 RAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSVNRRLLALRFKSNFKEEKWDRAINE 195 Query: 178 HQAAVDAIIAGDAERTVEVLRQHIM 202 H + A+ A D +R +LRQH++ Sbjct: 196 HDEMIQALEARDGKRLAGILRQHLL 220 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 17/210 (8%) Query: 8 SETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGA 67 ++T+ ++I I +L PG L+E LAE FGVSRT IR+ALI+L+ ++ + P+R + Sbjct: 3 TQTIVQTISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRAS 62 Query: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQ-AARDSSDPDAY 126 VA Q+ ++++++ E+ + + +TP E +L H A + AA + D D Sbjct: 63 QVAHPSFQEAFDLYQILHVVESGVVDILMQTITP-EQIAMLREHTAKEHAAFKAEDHDLA 121 Query: 127 FYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFD------EHQA 180 L FH + + N E +H RL RR + + K+ FD EH A Sbjct: 122 DKLGRGFHTLLISCLAN----EPLNNMHARL---RRKEALITALYKVDFDYCHLRGEHIA 174 Query: 181 AVDAIIAGDAERTVEVLRQH--IMIQGQRF 208 VD++ D+ R ++L H ++I+G RF Sbjct: 175 LVDSLETRDSFRAKQLLASHNNLVIKGYRF 204 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 19/210 (9%) Query: 1 MDTPKTRSETLR--ESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGI 58 M +P + T R +++ E + +L PG L+E +A+ FGV RT IR+ALI+L+ + Sbjct: 1 MPSPDLATPTQRIVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKL 60 Query: 59 VEMRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELL--AAHQACQA 116 V + RGA + E+ ++ E FEV+A E + +T + A+L AHQ+ Sbjct: 61 VTIEHNRGAHITELSDLEIRETFEVLAMLECAALEKFIKTITAFDIAKLRQHIAHQS--G 118 Query: 117 ARDSSDPDAYFYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFD 176 A D D F L FH I +HN L + +H +L RL + + FD Sbjct: 119 AHQHHDIDQEFRLGPDFHVLIVGLAHNRVLED----IHGKLTAQERL---ITSQYYGEFD 171 Query: 177 ------EHQAAVDAIIAGDAERTVEVLRQH 200 +H +D I +GD R ++L H Sbjct: 172 HVHLCQDHSQLIDLIESGDLARAQQLLIGH 201 >gi|152980892|ref|YP_001351781.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 73.9 bits (180), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 1/200 (0%) Query: 1 MDTPKTR-SETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIV 59 M PK + ++ E IEE I ++ PG + E +L+E + RTPIREA+ +LA ++ Sbjct: 11 MAEPKVKLTDIAYEQIEEAIITLRIPPGSVISELTLSEMLNIGRTPIREAIQRLAREHLL 70 Query: 60 EMRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARD 119 + P+RG +V EI ++ +++ E E E + + AARR P E H A Sbjct: 71 LVLPQRGLLVPEIDLRKQLKLLETRREVERLICKSAARRALPEERERFTRLHDEFIHAAA 130 Query: 120 SSDPDAYFYLNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQ 179 S D A+ + F++ + N F R +H R + + + H Sbjct: 131 SDDDVAFLRADREFNELSLVAARNEFAEGAMRLMHGLSRRFWYFHYKQAADVPEMARLHA 190 Query: 180 AAVDAIIAGDAERTVEVLRQ 199 A AI GD E L Q Sbjct: 191 AVAGAIAKGDVNAAGETLDQ 210 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 356,760 Number of extensions: 9692 Number of successful extensions: 52 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 9 Length of query: 222 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 142 Effective length of database: 925,261 Effective search space: 131387062 Effective search space used: 131387062 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)