BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2729.p
         (337 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding peripl...    77   2e-15
gi|152981268|ref|YP_001351817.1| TRAP-type mannitol/chloroaromat...    60   2e-10

>gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding
           periplasmic protein [Janthinobacterium sp. Marseille]
          Length = 365

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 20/314 (6%)

Query: 2   TRRHFLGALAAAPLASAVPSVWAQSAT-LKISHQFPGGTITEGDFRDRLVRTFAQQVSER 60
           T+ H      A  L S + S  AQ+ T +K SH  P  +      + +    F + V   
Sbjct: 31  TKLHLFMLGLALSLTSVIVS--AQTTTVIKFSHVSPADSP-----KGKAALRFKELVERN 83

Query: 61  TKGALKFEIYPGSSLMKTNAQFSALRKGALDM---SLVPLNYAGGEVPETNIGLMPGLVT 117
           ++  ++ ++YP + L K + +  AL+ GA+ M   SL  L   G  + +  +  +P   T
Sbjct: 84  SQRRIRVDVYPNNLLYKESDELEALQLGAVQMLAPSLAKLAQFG--LQDFEVFDLPFAFT 141

Query: 118 SYQQGASWKNAEVGKELARVLGEKGVVIVSWIWQAG-GVASRGKPIVDPADVKGMKVR-G 175
             +  A      +GK L R L  KG+V +++ W  G  + S  K +  P+D  G+ +R  
Sbjct: 142 DKESVARVTEGPIGKTLLRKLESKGMVGLAY-WDNGFKIMSGNKRLRVPSDFAGLAMRIH 200

Query: 176 GSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRD 235
            S+ +   ++  GA  + L + E+Y A+Q G +D A TS  +F + +  EV   +T    
Sbjct: 201 SSKVLSWQMEALGAIPLILDAYEVYPALQGGVVDGAETSPVNFYARKWYEVQSNVTISN- 259

Query: 236 KAYWYMFEPLMMSKAVFERLPKDQQAVIMAVGAEMEQFATKAAQADDIAVAQVYQKA-GA 294
             + Y+   ++++K  ++ LP D +  I     E   +    A+ ++ A  Q  +K+   
Sbjct: 260 --HGYLGSAVVVNKKFWDGLPSDLRNTIDLAMREATSYGNNLAEEENAAALQWIKKSKKV 317

Query: 295 KVVDLNAEVVKKWQ 308
           KV  L A+  + W+
Sbjct: 318 KVYTLTAQETEAWR 331


>gi|152981268|ref|YP_001351817.1| TRAP-type mannitol/chloroaromatic
           compound transport system, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 13/270 (4%)

Query: 2   TRRHFLGALAAAPLASAVPSVWAQSATLKISHQFPGGTITEGDFRDRLVRTFAQQVSERT 61
           +RR FLG    A  A+A+      +A      +F   T    D      + FA++V++ T
Sbjct: 14  SRRKFLGTATTASAAAALSFPMISTAQTVTQMRFQS-TWPSKDIFHEYAQDFAKKVNDMT 72

Query: 62  KGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLM---PGLVTS 118
            G LK E+ P  +++       A+ KG LD     + Y  G+  ++ I L    P     
Sbjct: 73  GGELKIEVLPAGAVVPAFGLLDAVSKGTLDGGHGVMGYNYGK--QSAIALWTSGPVFGMD 130

Query: 119 YQQGASWKNAEVGKE-LARVLGEKGVVIVSWIWQAGGVASRG---KPIVDPADVKGMKVR 174
                SW     GKE L ++    G  + S++         G   KPI    D++G+K R
Sbjct: 131 ANMVLSWHKYGGGKELLEKLYTSIGANVTSFLTGPMPTQPLGWFKKPITKKEDLQGLKFR 190

Query: 175 GGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAA-MTSSTSFMSFRLEEVAKALTTG 233
                +D+     GAAV  LP  EI +AM  G +D A   +++S       +V+K     
Sbjct: 191 TNGLAIDM-FTAMGAAVNALPGGEIVSAMDRGLLDGAEFNNASSDRILGFPDVSKVCMLQ 249

Query: 234 RDKAYWYMFEPLMMSKAVFERLPKDQQAVI 263
                   FE +  +K  +E LP   +A+I
Sbjct: 250 SFHQSSEQFE-ISFNKTKYEALPPKMKAII 278


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 702,055
Number of extensions: 27154
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 253
Effective length of database: 910,473
Effective search space: 230349669
Effective search space used: 230349669
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)